Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02499 ATGTTTCCACAGCTATGGATCTTGATAGCCTCAACCATTGCAACTTCACTGCTCATGTCCTCACTGGTTAAGTCATTTCCAGAAGCTGATAAGGTGAAATCCTTGCCTCACCAGTCACCTGTTTCTTTCCAACAATTTGCTGGCTATGTTGCTGTTGATGACAAGAGCCAGAGAGCTCTTTTTTACTACTTTGTTGAAGCAGAAACCAACCCTGCTTCTAAGCCTCTAGTTCTCTGGCTCAATGGAGGGCCTGGATGTACATCCGTTGGAGTTGGAGCCTTCACAGAGCATGGTCCTTTTGTTACAATTCAAGGGGAGGCTATTGAGAAAAATCAGTATAGTTGGAACAAAGAGGCAAACATTTTGTACCTAGAGTCACCAGCAGGTGTTGGATTCTCTTACTCTCTCAATTTGTCATTTTATAAAACACTGAACGATGAAGTCACAGCCCGAGACAGTCTGGTTTTCCTGCAGCGCTGGTTTGCCAAGTTCCCAGAATACAAGAATAGAGATTTTTATATAATGGGAGAGAGTTATGGAGGTCACTATGTACCTCAACTTGCTGAACTCATTATTAAGAGTAAAGTGAATTTCAACCTTAAGGGCATAGCAATAGGAAACCCTCTTCTGGATTTTGACACTGATATGAATGCAGTTGATGAATATTACTGGTCTCATGGAATTATAACTGATTATGCATACAAAATCAGGACCTCTCTATGTAACTCGTCTAGAGTATTAAGAGAATACTTCAGTGACCACATTTCCAACGATTGTCTTGTTGCAGCTCAAAAAGTCTCAGAAGAATACTCTTTTACAACTTTCATTGATCCATATTATGTTGTTGGGGACAAATGTCTTTCTTACAATGTTTCTCAGGCAGGTTTTCTTAGGGAGATGCTAAATTCAGGGATGTTTCAGTTTAGGAACTCCCATAATGTGCAACAAACTGAAGAACCTGACCAGCAAGTTGATGAGTGTATTTTGAAATATTCAGAGATGTACTTGAATAGGAAAGATGTGCAGAAGGCTCTCCATGCCCGGCTGGTGGGAACCACCAATTATCGTCTGTGCAGCAAAGGAATCATAAATGGTCCTGCTCCTGCTGACACTTCTTCCAATTTCAGGATTGTACAAACAAACTATGACATATTGAACAGAGAGATACCAACAATTAATGTTGTCGGTTTCCTTGTAAAATCGGGTCTTCGAGTCATCGTTTACAGTGGGGATCAAGACTCTGTGATTCCATTCATGGGCACGAGAAGATTGGTTGATAGACTAGCAAAGAAACTAGCACTTAAAACAACCGTGCCTTACAGTGCCTGGTTTGTGGACAAGCAGGTTGGAGGATGGACACAAGTTTATGGCAATCACCTCACGTATGCCACAGTAAGAGGAGCTTCACATGCCACTCCAGCTACTCAACCAAAGAGATCTTTTGCTTTGTTTAATGCGTTTCTTCAAGGGAAACCACTCCCTAAAGCATGA 1491 0.4145 MFPQLWILIASTIATSLLMSSLVKSFPEADKVKSLPHQSPVSFQQFAGYVAVDDKSQRALFYYFVEAETNPASKPLVLWLNGGPGCTSVGVGAFTEHGPFVTIQGEAIEKNQYSWNKEANILYLESPAGVGFSYSLNLSFYKTLNDEVTARDSLVFLQRWFAKFPEYKNRDFYIMGESYGGHYVPQLAELIIKSKVNFNLKGIAIGNPLLDFDTDMNAVDEYYWSHGIITDYAYKIRTSLCNSSRVLREYFSDHISNDCLVAAQKVSEEYSFTTFIDPYYVVGDKCLSYNVSQAGFLREMLNSGMFQFRNSHNVQQTEEPDQQVDECILKYSEMYLNRKDVQKALHARLVGTTNYRLCSKGIINGPAPADTSSNFRIVQTNYDILNREIPTINVVGFLVKSGLRVIVYSGDQDSVIPFMGTRRLVDRLAKKLALKTTVPYSAWFVDKQVGGWTQVYGNHLTYATVRGASHATPATQPKRSFALFNAFLQGKPLPKA 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02499 496 Pfam Serine carboxypeptidase 38 490 IPR001563 GO:0004185|GO:0006508
Pumo5g02499 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 134 IPR001563 GO:0004185|GO:0006508
Pumo5g02499 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 111 123 IPR001563 GO:0004185|GO:0006508
Pumo5g02499 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 460 473 IPR001563 GO:0004185|GO:0006508
Pumo5g02499 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 185 IPR001563 GO:0004185|GO:0006508
Pumo5g02499 496 Gene3D - 392 490 - -
Pumo5g02499 496 FunFam Carboxypeptidase 25 494 - -
Pumo5g02499 496 SUPERFAMILY alpha/beta-Hydrolases 34 494 IPR029058 -
Pumo5g02499 496 ProSitePatterns Serine carboxypeptidases, serine active site. 174 181 IPR018202 GO:0004185
Pumo5g02499 496 Gene3D alpha/beta hydrolase 27 288 IPR029058 -
Pumo5g02499 496 Gene3D - 327 363 - -
Pumo5g02499 496 FunFam Carboxypeptidase 391 490 - -
Pumo5g02499 496 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 477 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02499 Pumo-Chr5 69235163 69238852 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02499 401 493 Calmodulin-binding Proteins AT2G22960 33.333 2.14e-14 69.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02499 5 69235163 69238852 Pumo5g02499 5 69235163 69238852 ECH
Pumo9g00240 9 3598725 3604699 Pumo5g02499 5 69235163 69238852 PCT