Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02380 ATGTCTCAGACAGAGAAGGATCCGGGTATCAAGCTATTTGGCAGGAAGATTCCGGTGCCGGAATGTCTGATTCCGGCGAACACTGGACCCACGGATGCTTGCAGCAGCATAAAGAAAACAGAACTGGAAATACCAAGTGAATGTGGAGAAAACTCTGAGCAACAAGAAAATTCTTCTGACTCAAGGGATAGTAAACAAGAGTTCCAACATAAAGTGCAGGAAAATGAGCCAATAGTAAATCCCAAGCCTGTGGAAGATAATATGGAGACTGGTAGCTCAGATCAAGATAAAGTCTTAAAGAAACCAGACAAGATTCTTCAGTGTCCCCGATGCAACAGTTTGGACACCAAGTTTTGTTATTTCAATAACTACAATGTCAATCAACCTCGGCACTTCTGCAAGAACTGCCAAAGGTACTGGACTGCTGGTGGAACAATGAGAAATGTTCCCATAGGTGCTGGGAGACGGAAGAATAAGCACCTAGCCTCTCAATACCGACACATTATAGTAACCTCTGATGGAATTCCAACCACCAGGCTTGAGACCACAGATTTGTCTGGTCTCCAACAGCAGCATATAGCAAGTCTTGAATCCTCAGTTCCTTTCAGGCCTTCAACAGATAATGGCACCGTGTTGAAATTTGGTCCAGATACCCCTCTTTGCGAATCAATGGATTCAATGCTTAATCTTAGAGACCAGAGAAGATGTGTTGATGCAAGTTCTATCAGTTGTGTAGAGTATAGAGGGGAACCATCGTTATGTGGATCGTCTGTGACGAATAATGGTACTCAAGGAAGTGAATTATCTGAACATAATACATCAAATTGGTTACAATGTTACCCTGTTCCTCCATGGGTACTACCTTATCCAGGTTGGAATAATGTTAATTCCATGGAAGCGGTTCATCGATCTTCGGCACCAACGTGTAACCCATATAATAACACTGGTCCTGCAGCAATGCAATGGTGTCCCACACCAATGGTTGCAATTCCTGGCATGTGCCCACCAAGCATTCCTTTGCAATTTGTACCACCATCATACTGGAGTGGAACACCACTTTCGAATGCTGCAACTGGGGCAGTGTCAATAGGATCCAATGCTTGCCTTTCGCCGTCTTCCTCCACTAGTAACAGTTGTTGCTCAGGCAATGGCTCCCCAACACTTGGAAAGCACACTAGAGATACAGTTTGCACTGATGAAGAGAAATCAGAGAAGTGTGTTTTGGTTCCAAAGACCATTAGAATTGATGCCCCAAATGAGGCCTCAAGAAGTCCTATAAGGGCTACATTAGCTATCAAGCCTGATAAGCAACAACCTGTATCAAATGGTGATATTTTGAAAAAAATTGAACCAAAAGAAGGCAAAGATCGTGTATTGGGTGCCTCTCAAATCTTGGAAGCCAATCCAGCAGCCATTTCTCGTGCTCATGCATTTCAGGAGACCTTATAG 1449 0.4369 MSQTEKDPGIKLFGRKIPVPECLIPANTGPTDACSSIKKTELEIPSECGENSEQQENSSDSRDSKQEFQHKVQENEPIVNPKPVEDNMETGSSDQDKVLKKPDKILQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRHIIVTSDGIPTTRLETTDLSGLQQQHIASLESSVPFRPSTDNGTVLKFGPDTPLCESMDSMLNLRDQRRCVDASSISCVEYRGEPSLCGSSVTNNGTQGSELSEHNTSNWLQCYPVPPWVLPYPGWNNVNSMEAVHRSSAPTCNPYNNTGPAAMQWCPTPMVAIPGMCPPSIPLQFVPPSYWSGTPLSNAATGAVSIGSNACLSPSSSTSNSCCSGNGSPTLGKHTRDTVCTDEEKSEKCVLVPKTIRIDAPNEASRSPIRATLAIKPDKQQPVSNGDILKKIEPKEGKDRVLGASQILEANPAAISRAHAFQETL 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02380 482 PANTHER CYCLIC DOF FACTOR 2 1 481 IPR045174 GO:0003700|GO:0006355
Pumo5g02380 482 Pfam Dof domain, zinc finger 103 160 IPR003851 GO:0003677|GO:0006355
Pumo5g02380 482 MobiDBLite consensus disorder prediction 56 72 - -
Pumo5g02380 482 MobiDBLite consensus disorder prediction 44 98 - -
Pumo5g02380 482 ProSitePatterns Zinc finger Dof-type signature. 108 144 IPR003851 GO:0003677|GO:0006355
Pumo5g02380 482 ProSiteProfiles Zinc finger Dof-type profile. 106 160 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02380 Pumo-Chr5 66356052 66358933 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02380 7 481 C2C2-Dof Transcription Factor Family AT5G39660 34.750 1.03e-66 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo5g02380 zf-Dof 3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02380 - - gmx:100813787 885.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02380 5 66356052 66358933 Pumo5g02380 5 66356052 66358933 ECH