Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01415 ATGGTTTATACTTCCATCCCAGCATATATTGATCCAGCCAACTGGCAGCAACAGCAACCAAATCACCAGCAGCAAGGCAACAACACTGCTGCCAGCTCCCACCTTATTCTTCCACCACCAATACAACCGCCGCCGCCTCCGCCATCGCAACCGCATGGACTCGGCGGTAGTAACTCTACCGCCGGGTCCATCAGACCCGGTTCGATGGCGGATAGGGCAAGGATGGCCAACATACCCATGCAGGAAGCCCCACAGAAGTGTCCTAGATGTGAATCCACCAACACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCCCAGCCCCGCCACTTCTGCAAGGCCTGCAGAAGGTACTGGACACGTGGCGGGGCCTTGAGGAACGTCCCCGTCGGCGGCGGCTGCCGGAGGAACAAGAGGAGCAGAGGAACCTCTGGCAGCAGCGCCCGGTCTCCGGCAAACTCCGATCGCCAAACTGCGAGTGCCGGTTCGGCCTCCACCACCAGCGGCTCCTCTTCCGCTGACATGGTGGCCGGCCTCGGCGGCGGCACCGGAGTGCCGCCGTCTCTTAGGTTCATGGCTCCATTGCATCAACTTGGGGATCACCACCTTGGTGGTGGTGGTGGAGGAGAAATAGGGTTAAACTATGGCTTGAACTATGGGGCAATTTCAGGTCCAATGGGAGGAATAGGAGACTTGAATTTCCACATAGGAAGCACTTTGAGTGGTGGTGGTGGTGGTTCTATGTTTTCTGGTTTGGACCAATGGAGGATGCCACAAACTCACCAATTTCCCTTCTTGTCTGGCTTGGAAGCTTCTTCATCACATCATGGGTTGTATCCATATGAAGCTCCTAGTGGCAGTGATGGCTATGGTGGCACTCCCATTAAGGTTTCAACTTCTGGGGTGATGTCTCAGCTTGCTTCTGTGAAAATGGAAGACAATCATCATCATCATCATCATCATCAGGAACTTGGTTTGCCTAGACAGTTCTTGGGAGTGAACAATAATCCTAACACAAATGAGCAATATTGGAGTGGTGGTGGTGGTGGTGGTGGTGGTGCCTCTTCTGCTTGGACTGATCTTTCTGTTTTCAGCTCTTCTTCCACTACTAGCAACCCACTATAG 1125 0.5333 MVYTSIPAYIDPANWQQQQPNHQQQGNNTAASSHLILPPPIQPPPPPPSQPHGLGGSNSTAGSIRPGSMADRARMANIPMQEAPQKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRSRGTSGSSARSPANSDRQTASAGSASTTSGSSSADMVAGLGGGTGVPPSLRFMAPLHQLGDHHLGGGGGGEIGLNYGLNYGAISGPMGGIGDLNFHIGSTLSGGGGGSMFSGLDQWRMPQTHQFPFLSGLEASSSHHGLYPYEAPSGSDGYGGTPIKVSTSGVMSQLASVKMEDNHHHHHHHQELGLPRQFLGVNNNPNTNEQYWSGGGGGGGGASSAWTDLSVFSSSSTTSNPL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01415 374 MobiDBLite consensus disorder prediction 37 52 - -
Pumo5g01415 374 MobiDBLite consensus disorder prediction 129 179 - -
Pumo5g01415 374 MobiDBLite consensus disorder prediction 311 353 - -
Pumo5g01415 374 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 51 168 IPR045174 GO:0003700|GO:0006355
Pumo5g01415 374 MobiDBLite consensus disorder prediction 329 345 - -
Pumo5g01415 374 Pfam Dof domain, zinc finger 84 139 IPR003851 GO:0003677|GO:0006355
Pumo5g01415 374 MobiDBLite consensus disorder prediction 139 174 - -
Pumo5g01415 374 ProSitePatterns Zinc finger Dof-type signature. 87 123 IPR003851 GO:0003677|GO:0006355
Pumo5g01415 374 MobiDBLite consensus disorder prediction 16 67 - -
Pumo5g01415 374 MobiDBLite consensus disorder prediction 16 35 - -
Pumo5g01415 374 ProSiteProfiles Zinc finger Dof-type profile. 85 139 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01415 Pumo-Chr5 37063526 37065377 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01415 1 367 C2C2-Dof Transcription Factor Family AT2G37590 41.253 1.86e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo5g01415 zf-Dof 4.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01415 - - gmx:100796820 573.548