Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00676 ATGGGGAGGGGAAGAGTGGAGTTGAAGAGGATAGAGAACAAGATAAACAGACAAGTCACCTTTGCAAAGAGGAGAAATGGGCTTCTCAAGAAAGCCTATGAGCTATCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAACTTTATGAGTTCTGTAGCAGCTCTAGCATGCTCAAAACACTTGATAGGTACCAGAAATGCAGTTATGGCGCTGTGGAAGTTAGCAAACCTGCCAAAGAGCTCGAGAGCAGCTACCGTGAATACTTGAAGCTGAAAGCAAGATTTGAATCACTTCAAAGGACCCAAAGAAACCTTTTAGGGGAAGACTTGGGCCCACTGGGTACCAAAGAACTTGAGCAGCTTGAACGGCAATTGGATTCATCTCTAAAGCAAGTGAGGTCCACAAAGACACAATTCATGCTGGACCAGTTAGCTGATCTTCAAAATAAGGAGCAAATGTTGGTAGAAGCAAACAGATCCTTGACAATGAAGCTGGAAGAAATCAATTCAAGAGATCACTACAGGCAATCATGGGAAGCGGGTGATCAAAGTATGCCATATGGTGGTCCACAGAATTCTCACTCTCAGGGCTTCTTCCAGCCATTGGAATGCAACCCCACATTGCAGATTGGTCCTGATTACAGGTACAATGCTGTAGCTTCAGATCAGATAACTGCCACAACTCAAGCTCAACAAGTGAGTGGCTTTATTCCAGGGTGGATGCTTTGA 747 0.4511 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLDRYQKCSYGAVEVSKPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLGTKELEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVEANRSLTMKLEEINSRDHYRQSWEAGDQSMPYGGPQNSHSQGFFQPLECNPTLQIGPDYRYNAVASDQITATTQAQQVSGFIPGWML 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00676 248 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Pumo5g00676 248 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo5g00676 248 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Pumo5g00676 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 169 - -
Pumo5g00676 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo5g00676 248 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Pumo5g00676 248 Coils Coil 124 144 - -
Pumo5g00676 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pumo5g00676 248 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo5g00676 248 MobiDBLite consensus disorder prediction 186 206 - -
Pumo5g00676 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pumo5g00676 248 MobiDBLite consensus disorder prediction 192 206 - -
Pumo5g00676 248 FunFam MADS-box transcription factor 1 13 87 - -
Pumo5g00676 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo5g00676 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo5g00676 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo5g00676 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00676 Pumo-Chr5 13175548 13181244 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo5g00676 K-box 8.5e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00676 5 13175548 13181244 Pumo5g00676 5 13175548 13181244 ECH
Pumo5g00676 5 13175548 13181244 Pumo4g01203 4 15303348 15310546 ECH
Pumo5g00676 5 13175548 13181244 Pumo10g02262 10 31566491 31578624 ECH
Pumo2g02385 2 51667392 51672643 Pumo5g00676 5 13175548 13181244 PCT