Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00675 ATGGGAAGGGGTAGGGTTCAGCTGAAGCGGATCGAGAACAAAACAAGCCAGCAAGTGACGTTTTCCAAGCGTAGATCGGGACTTCTCAAGAAAGCGCACGAAATCTCTGTGCTTTGTGATGCTCAAGTCGCTTTGATTATGTTCTCTACCAAAGGCAAACTTTTTGAGTATTCCTCTGAACGCAGCATGGAAGACGTCCTGGAACGTTACGAGAGATATAGCCATACAGCACTTGCTGGAGCTAACGATGAATCACAGGGAAATTGGTCTTTCGAATATATCAAGCTCACCGCTAAAGTGGAAGTCTTGGAGAGGAACGTAAGGAATTTCTTGGGAAATGAACTGGATCCCTTGAGTTTGAAAGAGCTTCAGAGTTTGGAGCAGCAGCTTGACACATCTCTGAAGCGCATCCGAACAAGAAAGAACCAAGTTATGAATCAATCCATCTCAGAGCTGCATAAAAGGGGAAGGACTTTACAAGAGCAAAACAGCAAGCTAGCAAAGATGAAGGAGAAAGTGAAGACACCAACTGAACGTCCACACAGCGGCCCAGAAACTCTAGGCCAAAATTCATCCACCCTCAACTTATCTTCTCCACAGCTACTACCACCACAACAAAGACTGGTTCCTTCTCTAACTCTCTGTGAGACAATGCAAGGAAGAGCATCGGTGGAAGAAACAGGTGAAGCTCAAACAGCCCCAAGTGGCAATTCTCTCATCCCACCATGGATGCTGCATATCTGA 744 0.4597 MGRGRVQLKRIENKTSQQVTFSKRRSGLLKKAHEISVLCDAQVALIMFSTKGKLFEYSSERSMEDVLERYERYSHTALAGANDESQGNWSFEYIKLTAKVEVLERNVRNFLGNELDPLSLKELQSLEQQLDTSLKRIRTRKNQVMNQSISELHKRGRTLQEQNSKLAKMKEKVKTPTERPHSGPETLGQNSSTLNLSSPQLLPPQQRLVPSLTLCETMQGRASVEETGEAQTAPSGNSLIPPWMLHI 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00675 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo5g00675 247 ProSiteProfiles K-box domain profile. 86 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo5g00675 247 MobiDBLite consensus disorder prediction 182 203 - -
Pumo5g00675 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 176 - -
Pumo5g00675 247 MobiDBLite consensus disorder prediction 147 203 - -
Pumo5g00675 247 MobiDBLite consensus disorder prediction 221 247 - -
Pumo5g00675 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pumo5g00675 247 Coils Coil 123 143 - -
Pumo5g00675 247 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Pumo5g00675 247 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Pumo5g00675 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo5g00675 247 MobiDBLite consensus disorder prediction 154 179 - -
Pumo5g00675 247 MobiDBLite consensus disorder prediction 221 238 - -
Pumo5g00675 247 Pfam K-box region 84 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo5g00675 247 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Pumo5g00675 247 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Pumo5g00675 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo5g00675 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo5g00675 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00675 Pumo-Chr5 13156304 13168796 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo5g00675 K-box 7.5e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00675 5 13156304 13168796 Pumo5g00675 5 13156304 13168796 ECH
Pumo5g00675 5 13156304 13168796 Pumo2g02384 2 51633206 51643739 PCT