Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00611 ATGTTCCCTTCCACTAATTACACCTCCTCAGGCTCTTACCCTCGTTTCCCTTCTTCATCTTCTTCTTCCACTTCACCCTACCCTTCTTTTACTTTCCTCCACCCTGAAAATTCTTCTTCCAGCAACAACACCACCTTTCTCCATGATCCACTTGCTGTTACCTACATACCCTCTCATTACCATGCTCCAATCCCAGAAGCACTAGCCAATTGGGCAGTTGCAGATTGTGCTGCTGCAGCAATGCTGAATAAGGATCTCGGAGGTGCCCTTTATGGCATCACTAAGAAACCGGTGAAGAAAGCAACCAAGAAAGACAGGCACAGCAAGATTCACACATCTCAGGGTTTGAGGGACCGAAGGGTGAGGCTTTCCATTGAGATCGCACGCAAGTTCTTCGATCTTCAAGACATGTTAGGGTTTGACAAAGCCAGCAACACCCTTGACTGGCTCTTCACAAAGTCCAAGAAGGCAATTAAGGAGCTAACTCGAAGCAAGAACAGTGCTGAAAGCTTCGAATTCTCCTCATCTTCGGAGGGTGAAGTGGTTTTTACGATCCAACAAGACCTACAACAACAACAACAACAACAACAAGAAGGGGTAGATTTGGAAGAAGGGAAGTTGAAAGAGCCTGCTTATAATTGTGTTAAAGCAAAGATGAAGGAATCTAGGGAAAAAGCAAGGGCAAGAGCAAGGGAAAGGACTAGTAGCAAGGTATTGTGCAACATAAGTGGCGAAGGGAAGGTGCAAGAGTTGAAGAAAAAGTGCCCTGCAACTGAAAACCCTCAAATCCTGAACCAATTAAGGTCATCCCTTCAACCTCCTCATCCTCAAGATGTGGGTGGAGAAGTGCCAAGAGATGATGAATTCAACGTTATTGAGGAATCCATTGTCATCAAGAGAAAGTTGAAACACACTTTGATGTCTTCCATTCATCACCAAAACGCTGTGATCCCTAAGGAAGCAAGTGTAAACAACAGTGACTACCACTCCTTCCCCAATTTGTCGCCAAATTGGGAAGCTAATAATGGTGCCAATGGACGCTCCACCTTTTGTACAATAGCCAGCATGAATCTATCAACAGGGCTTCAAATTTTTGGAAAATCTTGGGAGGAGTGCACCAATCCTCATCCAAGCTAA 1137 0.4485 MFPSTNYTSSGSYPRFPSSSSSSTSPYPSFTFLHPENSSSSNNTTFLHDPLAVTYIPSHYHAPIPEALANWAVADCAAAAMLNKDLGGALYGITKKPVKKATKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELTRSKNSAESFEFSSSSEGEVVFTIQQDLQQQQQQQQEGVDLEEGKLKEPAYNCVKAKMKESREKARARARERTSSKVLCNISGEGKVQELKKKCPATENPQILNQLRSSLQPPHPQDVGGEVPRDDEFNVIEESIVIKRKLKHTLMSSIHHQNAVIPKEASVNNSDYHSFPNLSPNWEANNGANGRSTFCTIASMNLSTGLQIFGKSWEECTNPHPS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00611 378 ProSiteProfiles R domain profile. 220 237 IPR017888 -
Pumo5g00611 378 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 44 342 IPR005333 GO:0003700
Pumo5g00611 378 MobiDBLite consensus disorder prediction 1 22 - -
Pumo5g00611 378 ProSiteProfiles TCP domain profile. 103 161 IPR017887 -
Pumo5g00611 378 Pfam TCP family transcription factor 102 237 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00611 Pumo-Chr5 11941193 11943063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00611 57 341 TCP Transcription Factor Family AT1G67260 32.776 4.70e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pumo5g00611 TCP 5e-43 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00611 5 11941193 11943063 Pumo4g01139 4 14654232 14656027 ECH
Pumo5g00611 5 11941193 11943063 Pumo5g00611 5 11941193 11943063 ECH
Pumo10g02331 10 33654108 33656047 Pumo5g00611 5 11941193 11943063 ECH