Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03977 ATGGCGGATCGGGCCAAGATTCCGGCCCAGGAAGGAGCTCTGAAGTGTCCTAGGTGTGAATCTACCAACACAAAGTTTTGCTACTTCAACAATTACAGCCTCTCTCAGCCTAGGCACTTTTGCAAGACATGTAGGCGCTATTGGACAAGAGGTGGTGCTCTCAGGAACGTTCCTGTTGGTGGAGGATGCAGAAGGAACAAGAAGAACAAAAGGAGTCGCTCCAAATCTCCGGTTTCTGCTGAGAAACCATCACTTCCCAATTCCACAAGTGCAATCCCTGAGCTTATTGGTCGATTCCCACAACCCTTCATGGCCTCTCTTCAGAGTATGAACCGCTATGGTGTAGGGAACACAGGTGTTAACTTGCGTGAGATTCAAGCACAGAACGGTTCTGATATGGGGTTTCAAATTGGAGGTCATGGTTCAAGTGTTACTACTTCAGGAGTAGGAGGAGGAGTGGAGCAGTGGCGGTTTCAGCAGTTTCCTTTCTTGAATGGTTTTGAGTCAACTTCAGCTGTTTCTTCCTACCCTTTTCAAAGTGAAAGTGTTGAAGGTTTGGTTGGAGATATTGCCGCAACTTCTAGGGTTACTCAGCTGCCAGCACGGGTTAAATTGGAATATAACGGTGGTTTGAATTTGTCAAGATCTCCTTTGAGTGTCTCAGAAAATAGTAACCATTACTATTCATGGACTGATTTATCTGGTCTTGCATCTTCTTCCGCGAGTCATCTCTTGTAA 738 0.4593 MADRAKIPAQEGALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPVSAEKPSLPNSTSAIPELIGRFPQPFMASLQSMNRYGVGNTGVNLREIQAQNGSDMGFQIGGHGSSVTTSGVGGGVEQWRFQQFPFLNGFESTSAVSSYPFQSESVEGLVGDIAATSRVTQLPARVKLEYNGGLNLSRSPLSVSENSNHYYSWTDLSGLASSSASHLL 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03977 245 Pfam Dof domain, zinc finger 13 68 IPR003851 GO:0003677|GO:0006355
Pumo4g03977 245 ProSitePatterns Zinc finger Dof-type signature. 16 52 IPR003851 GO:0003677|GO:0006355
Pumo4g03977 245 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 9 142 IPR045174 GO:0003700|GO:0006355
Pumo4g03977 245 ProSiteProfiles Zinc finger Dof-type profile. 14 68 IPR003851 GO:0003677|GO:0006355
Pumo4g03977 245 MobiDBLite consensus disorder prediction 58 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03977 Pumo-Chr4 80400162 80402089 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03977 2 164 C2C2-Dof Transcription Factor Family AT3G55370 50.000 2.56e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo4g03977 zf-Dof 1.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03977 - - gmx:100775899 408.683