Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03908 ATGAATATGGATCCTTCCAGTGGACAACCCCAGCAAATGTCTAACCAGTCAGTGGAGAAGAAGCCAAAGCCTCATCCAGAACAAAATCTGAAATGCCCAAGATGTGACTCCACCAGCACAAAATTTTGCTACTACAACAATTATAGTTTTTCTCAGCCGAGATATTTCTGCAAGTCTTGTAGGAGATATTGGACCAGAGGAGGAACACTGAGGAATGTTCCAGTGGGAGGAGGATGCAGGAAGAAGAGATCATCACCATCATCATTATCATCAAAGAGGGCACAAGATCAAACATTCACACCCAATCTTAACCCACTCACTACACTCCCTAATTTGTCTTATGACTCCAATAACTTCACTCTAGCATTAGCTAGGTTTCAGAAACAATCAAGTGAGCAATTGGGTTACAATGATCATGATCTTTCAACTTTGGGAAACCCCACAGGCTCCTTTTGTGACATTCTTGGCAATTCAGGCATGAATCACTCCTCAGCAAACCCTTCATTTTTGGATGCAATTCGAACTGGGTTCCTTGAGACACAAAATCATCTTCAGAATTTGTATTGTGTGTATGGAAATGGGGACATGGGAGAGGTGGATAATGGCAATTCTGGTGGGGTTGGTGTTAGTGGAGAGATGATGCTCCCTTATGATCAAGTAATAAGCAATGCAACCACTCAATCAATGAGTGTAATGAAGCAAGAAATGTGTAGTGGTAGAGAACAAAGTGAAAGGAAGGTGTTGGGGGGTTTCCTATGGCAGCTTAATGCAGACACAAACATTGGTGAACTTGATTCAGGAAGAGCAATTGCAAGTTGGAACAATTTCACAAATTCTTGGCATGGGCTTCTCCAAAGTCCCCTAATGTAG 870 0.4218 MNMDPSSGQPQQMSNQSVEKKPKPHPEQNLKCPRCDSTSTKFCYYNNYSFSQPRYFCKSCRRYWTRGGTLRNVPVGGGCRKKRSSPSSLSSKRAQDQTFTPNLNPLTTLPNLSYDSNNFTLALARFQKQSSEQLGYNDHDLSTLGNPTGSFCDILGNSGMNHSSANPSFLDAIRTGFLETQNHLQNLYCVYGNGDMGEVDNGNSGGVGVSGEMMLPYDQVISNATTQSMSVMKQEMCSGREQSERKVLGGFLWQLNADTNIGELDSGRAIASWNNFTNSWHGLLQSPLM 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03908 289 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
Pumo4g03908 289 MobiDBLite consensus disorder prediction 74 102 - -
Pumo4g03908 289 MobiDBLite consensus disorder prediction 83 102 - -
Pumo4g03908 289 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 181 IPR045174 GO:0003700|GO:0006355
Pumo4g03908 289 MobiDBLite consensus disorder prediction 1 32 - -
Pumo4g03908 289 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Pumo4g03908 289 Pfam Dof domain, zinc finger 28 84 IPR003851 GO:0003677|GO:0006355
Pumo4g03908 289 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03908 Pumo-Chr4 79562532 79564544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03908 32 289 C2C2-Dof Transcription Factor Family AT2G28510 37.455 4.89e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo4g03908 zf-Dof 5.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03908 - - gmx:778104 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03908 4 79562532 79564544 Pumo4g03908 4 79562532 79564544 ECH
Pumo4g03908 4 79562532 79564544 Pumo11g01512 11 46021370 46024208 PCT