Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01928 ATGGCTACAATGGCCATAATATCCACCTTGCTCTTTCTTTCCTTCACTTTCTCATATGCTATTGACACGTCCATCATCAACTACACCGAAAATGAGGTCATGGCCATGTACGAGGAGTGGCTGGTGAAGCACCAAAAAGTGTACAATGGGTTGGGAGAGAAGGACAAGAGGTTTCAAGTTTTCAAAGACAACTTGGGATTCATACAAGAGCACAACACTCAAAACCACACTTACAAACTTGGGTTGAACAAGTTTGCTGACATGACAAATGAGGAATACCGTGCCATGTATTTGGGCACCAAGAGTGATGCCAGGCGCAGGCTCATGAAAATCAAGAGCACCGGCCACCGGTACGCCTACAACGCCGGTGACCGGTTGCCGGTGCATGTGGATTGGAGATTGAAAGGTGCACTTGCTCCTATCAAGGATCAGGGAAGTTGTGGAAGCTGTTGGGCGTTCTCAACGGTGGCCACAGTGGAAGCAATAAATAAGATAGTGACAGGGAAGTTTGTGTCCTTATCTGAACAAGAACTTGTGGACTGTGACAGAGCCTACAATGAAGGATGCAATGGTGGTCTTATGGACTACGCATTCGAATTCATCATTCAAAATGGTGGCATTGACACTGACAAAGATTATCCATACCGGGGAGTTGATGGCACTTGTGATCCAACTAAGAAAAATGCTAAGGTAGTGAATATTGATGGGTACGAGGATGTTCCACCATATGATGAGAATGCCTTGAAGAAAGCTGTGGCTCATCAACCCGTAAGCGTTGCTATTGAGGCCTCTGGCAGGGCTTTGCAACTTTATCAGTCGGGTGTATTTACTGGTAAATGTGGGACAAGTTTAGATCATGGTGTGGTTGTTGTTGGATATGGCTCTGAAAATGGTGTGGATTACTGGCTGGTGAGGAATTCATGGGGCAATGGATGGGGTGAGGATGGCTATTTCAAGATGGAGCGCAATGTGAGAACCTCCACTGGCAAGTGTGGAATTGCAATGGAGGCCTCCTACCCTGTGAAGAATGGTCTAAACTCTGCAGTTCCTAATTCAGTTTATGAAAGCACTGAGGTGTATGTTAGCAGTGCTTGA 1095 0.4603 MATMAIISTLLFLSFTFSYAIDTSIINYTENEVMAMYEEWLVKHQKVYNGLGEKDKRFQVFKDNLGFIQEHNTQNHTYKLGLNKFADMTNEEYRAMYLGTKSDARRRLMKIKSTGHRYAYNAGDRLPVHVDWRLKGALAPIKDQGSCGSCWAFSTVATVEAINKIVTGKFVSLSEQELVDCDRAYNEGCNGGLMDYAFEFIIQNGGIDTDKDYPYRGVDGTCDPTKKNAKVVNIDGYEDVPPYDENALKKAVAHQPVSVAIEASGRALQLYQSGVFTGKCGTSLDHGVVVVGYGSENGVDYWLVRNSWGNGWGEDGYFKMERNVRTSTGKCGIAMEASYPVKNGLNSAVPNSVYESTEVYVSSA 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01928 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 301 320 IPR025661 -
Pumo4g01928 364 PRINTS Papain cysteine protease (C1) family signature 301 307 IPR000668 GO:0006508|GO:0008234
Pumo4g01928 364 PRINTS Papain cysteine protease (C1) family signature 144 159 IPR000668 GO:0006508|GO:0008234
Pumo4g01928 364 PRINTS Papain cysteine protease (C1) family signature 286 296 IPR000668 GO:0006508|GO:0008234
Pumo4g01928 364 SMART pept_c1 126 341 IPR000668 GO:0006508|GO:0008234
Pumo4g01928 364 Pfam Cathepsin propeptide inhibitor domain (I29) 37 93 IPR013201 -
Pumo4g01928 364 Pfam Papain family cysteine protease 126 341 IPR000668 GO:0006508|GO:0008234
Pumo4g01928 364 SUPERFAMILY Cysteine proteinases 29 341 IPR038765 -
Pumo4g01928 364 FunFam Cysteine protease 1 18 343 - -
Pumo4g01928 364 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 30 340 IPR013128 GO:0008234
Pumo4g01928 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 144 155 IPR000169 -
Pumo4g01928 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 284 294 IPR025660 -
Pumo4g01928 364 Gene3D Cysteine proteinases 22 343 - -
Pumo4g01928 364 SMART Inhibitor_I29_2 37 93 IPR013201 -
Pumo4g01928 364 CDD Peptidase_C1A 127 340 IPR039417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01928 Pumo-Chr4 26138150 26140322 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00293 9 4713763 4715333 Pumo4g01928 4 26138150 26140322 ECH
Pumo4g01928 4 26138150 26140322 Pumo4g01928 4 26138150 26140322 ECH