Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01924 ATGGCTCTCGGCGACGATGCACAACAATACCACTCTCCCTCGTTCCTCGATGCCCTTCTCTGCGAAGAGCGTGACACCTTCGAGGAAGACTTTGATGCGAACGGTGATGAGTGTGAGACCAAAAACGATGACCCATCTGGGATAAAGTCGCAATCTTTGCCCTTGGTTTTGCTCGACAATGACCTGTTCTGGGAAGATGAGGAGCTTGTGTCGTTAATCGCGAAAGAGGGAGAGACCCATTTGTGTTCTCTTGGTGGCATTGCTGATGGGGCCTTGGAAGGGCCTCGTGTGGAGGCTGTGAACTGGATTTCCAAAGTTTGTGGACACTATGGGTTCTCTGCTTTGACCACTGTTCTTGCTGTCAACTACTTTGATAGGTTCGTAACAAGTTTGAGGTTTCAGAGGGACAAGCCGTGGATGACACAGCTCACTGCTGTTGCTTGTTTGTTCCTTGCTGCAAAAACGGAAGAGACCCATGTGCCACTCCTTTTGGACCTTCAGGTGGAGGAATCAAGGTTTGTGTTTGAGGCAAAAACTATTCAGAGAATGGAGCTGCTAGTGTTGTCAACTCTTAAATGGAGGATGCATCCGGTGACCCCAATTTCCTTCTTTGAACATATTGTTAGAAGGCTTGGTTTGAAGACTCGCCTGCATTGGGAGTTTCTATGGCGTTGTGAGCGGGTTCTTCTCAATGTCATTACAGATTCAAGGGTTATGAGTTATCTTCCTTCCACATTGGCTGCTGCGACAATGATCCATGTTATTAAAGAGATTGAATCATTTAATGCGACTGAGTACATTGATCAGCTTCTGGGTTTACTAAAGATTAACGAGGAACAAGTGAACCAGTGCTACAAACTCATACAGAAACTATTAGGTTGCTTTGAAGGCATTTACAGCCTTCACCAGAAACGCAAGCTACTATCTGAACCAGGTAGCCCAGGCGGTGTCATTGATACATCTTTCAGTTGTGATAGCTCGAATGATTCATGGGCCGTGTCATCATCAGTCTCACTTTCACTGGAGCCGCTGTTTAAGAGGAGAAGACCTCAGGACCAGCAAATGCGATTGCCTTCTGTTAATCGTGTGTCAATTGATGTTCTTAATAGCCCTCGTTAA 1119 0.4611 MALGDDAQQYHSPSFLDALLCEERDTFEEDFDANGDECETKNDDPSGIKSQSLPLVLLDNDLFWEDEELVSLIAKEGETHLCSLGGIADGALEGPRVEAVNWISKVCGHYGFSALTTVLAVNYFDRFVTSLRFQRDKPWMTQLTAVACLFLAAKTEETHVPLLLDLQVEESRFVFEAKTIQRMELLVLSTLKWRMHPVTPISFFEHIVRRLGLKTRLHWEFLWRCERVLLNVITDSRVMSYLPSTLAAATMIHVIKEIESFNATEYIDQLLGLLKINEEQVNQCYKLIQKLLGCFEGIYSLHQKRKLLSEPGSPGGVIDTSFSCDSSNDSWAVSSSVSLSLEPLFKRRRPQDQQMRLPSVNRVSIDVLNSPR 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01924 372 Pfam Cyclin, N-terminal domain 96 195 IPR006671 -
Pumo4g01924 372 FunFam CYCLIN D32 197 286 - -
Pumo4g01924 372 SUPERFAMILY Cyclin-like 199 298 IPR036915 -
Pumo4g01924 372 SMART Cyclin_C_2 198 311 IPR004367 -
Pumo4g01924 372 Gene3D - 96 196 - -
Pumo4g01924 372 SMART cyclin_7 101 189 IPR013763 -
Pumo4g01924 372 CDD CYCLIN_AtCycD-like_rpt1 96 193 - -
Pumo4g01924 372 SUPERFAMILY Cyclin-like 65 196 IPR036915 -
Pumo4g01924 372 FunFam D3-type cyclin 89 196 - -
Pumo4g01924 372 CDD CYCLIN_AtCycD-like_rpt2 198 288 - -
Pumo4g01924 372 Gene3D - 197 286 - -
Pumo4g01924 372 PANTHER CYCLINS 96 290 IPR039361 -
Pumo4g01924 372 Pfam Cyclin, C-terminal domain 198 292 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01924 Pumo-Chr4 26084487 26086400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01924 1 362 Core Cell Cycle Gene Families AT5G67260 52.151 2.59e-114 337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01985 8 56474942 56476842 Pumo4g01924 4 26084487 26086400 ECH
Pumo9g00302 9 4830824 4832921 Pumo4g01924 4 26084487 26086400 ECH
Pumo4g01924 4 26084487 26086400 Pumo4g01924 4 26084487 26086400 ECH
Pumo4g01924 4 26084487 26086400 Pumo8g01985 8 56474942 56476842 PCT