Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01920 ATGATGGCCGTAAGCCGAAAGGACATGGACCGGATCAAGGGTCCATGGAGCCCGGAGGAGGACGAGGCCCTGCAGAAGCTCGTGGAGCGGCACGGGCCCAGAAACTGGTCGCTAATCAGCAGGTCCATTCCGGGGCGCTCCGGGAAATCCTGCAGGCTCCGTTGGTGCAACCAGCTCTCGCCCCAGGTCGAGCACCGGGCCTTCACTCCCGAAGAGGACGAGACGATAGTCCGGGCCCATGCCCGCTTCGGCAACAAGTGGGCCACCATAGCCCGCCTCCTCTCGGGCCGAACCGATAACGCTATCAAAAACCACTGGAACTCAACCCTAAAGCGCAAGTGCTCATCCATCATGATCGCCGACGATCCCGCCGCCGGCTTCAACCCAAGGCCGCTCAAGCGCTCCGTCAGCGCCGGCGCCGCCGTGCCTCCCGGAAGCCCCTCCGGATCCGATGTGAGCGAGTCCAGCGCTCCCGGCGGCGTGGTCTCTCCTTCGCACTTGTTTCGCCCCGTGCCGGTTCGACCGGTTGTCGAAACGGCGTCGTCTTGCGATGACGGGCCTACTACTTCGCTGTCGCTGTCTCTTCCTGGCGTGGAGTCATCGGAAATCTCGAATCGCGCCACGACGGTGCCGGTGAATCCTGTGCCAGTGATGCCGGTGGCCACCGTTGCGGCTCCGGCGCCGGAGGTTGGATTAGGAGCGTTGAATTTGAGTGCAGAGTTTATGGCGGTGATGCATGAGATGATAAGGAAGGAGGTGAGGAGTTACATGGAGCAGCAGAATGGGATGTGTTTTCAGAGTATGGATGGGTTTAGGAACGTGTCGGTGAAGCGAATTGGGATTAGCAGGGTTGATTCGTAA 861 0.6098 MMAVSRKDMDRIKGPWSPEEDEALQKLVERHGPRNWSLISRSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDETIVRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSIMIADDPAAGFNPRPLKRSVSAGAAVPPGSPSGSDVSESSAPGGVVSPSHLFRPVPVRPVVETASSCDDGPTTSLSLSLPGVESSEISNRATTVPVNPVPVMPVATVAAPAPEVGLGALNLSAEFMAVMHEMIRKEVRSYMEQQNGMCFQSMDGFRNVSVKRIGISRVDS 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01920 286 ProSiteProfiles Myb-like domain profile. 8 59 IPR001005 -
Pumo4g01920 286 FunFam Transcription factor MYB44 67 113 - -
Pumo4g01920 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 114 IPR017930 -
Pumo4g01920 286 CDD SANT 15 57 IPR001005 -
Pumo4g01920 286 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Pumo4g01920 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 63 IPR017930 -
Pumo4g01920 286 Gene3D - 12 64 - -
Pumo4g01920 286 SMART sant 12 61 IPR001005 -
Pumo4g01920 286 SMART sant 64 112 IPR001005 -
Pumo4g01920 286 SUPERFAMILY Homeodomain-like 10 106 IPR009057 -
Pumo4g01920 286 CDD SANT 67 110 IPR001005 -
Pumo4g01920 286 PANTHER MYB PROTEIN-RELATED 13 171 - -
Pumo4g01920 286 Pfam Myb-like DNA-binding domain 16 74 - -
Pumo4g01920 286 Gene3D - 66 124 - -
Pumo4g01920 286 MobiDBLite consensus disorder prediction 135 166 - -
Pumo4g01920 286 FunFam MYB transcription factor 13 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01920 Pumo-Chr4 25990746 25991606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01920 5 285 MYB Transcription Factor Family AT4G37260 52.322 4.03e-95 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo4g01920 Myb_DNA-bind_6 1.8e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01988 8 56515210 56517426 Pumo4g01920 4 25990746 25991606 ECH
Pumo9g00310 9 4932800 4934530 Pumo4g01920 4 25990746 25991606 ECH
Pumo4g01920 4 25990746 25991606 Pumo4g01920 4 25990746 25991606 ECH
Pumo4g01920 4 25990746 25991606 Pumo8g01988 8 56515210 56517426 PCT