Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01412 ATGGGTTTTTCCTCTCTCCATGTCTGCGTCGACTCATCAGATCACTGGATGCAGGGCACAATTCACGAGGAGTGTGGGGTGGATTCTTCTTCACCATCTGGCGACATGCTTCCATGCTCGAGGCCAATGACAGAGAGGAGGCTAAGACCCCCGCAAGAGCAAGCCCTCAAGTGCCCTAGGTGTGAATCAACACACACCAAGTTCTGCTACTACAACAACTACAGTCTCTCCCAGCCCAGGTACTTCTGCAAGACATGTAGAAGGTACTGGACCAAAGGAGGCACTCTTAGGAACATTCCCGTTGGTGGTGGTTGCAGAAAGAACAAGAAAGTTTCTACTAAGAAACACAATGACCACCAACCATCTATTAGTCAAAACCAAGCTCACCCTGGACCCTCTTATCTTCATAACCACAAAGATCTTCAACTTCCCTTCCTAGATGTGCAATTTTCCCACCTCAACAATTTACTTGGGACTAATGCTGGGGCACTGCAGGGAAACCCTAATTTTATGGAGATTAAGTATAACATGGGCATGCTTGAGAACCCTAGGCCTATTGACTTCATGGAAAGCAGGTTGGATGGTGTGAATATGATTAGGGGTTCTACTAGGAGTTTTGATCTTCTTGAAAATAATGATATGAGTGTGGGTGGTGGTGTTGGGTTTGGTGATGTGAGTGGATACAATGGATTGCCATTGAATTATCAAGGTCTTTCTCCTCCAGCATTTGGGGGCATGTCTCTAGATGGAAGCATTGGTAATGTTGGAACTTATATAACGAACTCTTGCCATCGACTTATGTTGCCCTATGATGGAGGTGATAACACCCTTAATGGTTCAGTTGATGTGAAGCCAAACCCTGAGCTGTTGTCCCTTGAATGGCAAGATCAGGGTTGCTCTGATGCTGAAAAAGTGTCATTGGGATATCTTAATGGTTCAGGATCATGGACCGGCTATGGATCTTCCACAACAAACCCTTTGGTCTAG 987 0.4569 MGFSSLHVCVDSSDHWMQGTIHEECGVDSSSPSGDMLPCSRPMTERRLRPPQEQALKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSTKKHNDHQPSISQNQAHPGPSYLHNHKDLQLPFLDVQFSHLNNLLGTNAGALQGNPNFMEIKYNMGMLENPRPIDFMESRLDGVNMIRGSTRSFDLLENNDMSVGGGVGFGDVSGYNGLPLNYQGLSPPAFGGMSLDGSIGNVGTYITNSCHRLMLPYDGGDNTLNGSVDVKPNPELLSLEWQDQGCSDAEKVSLGYLNGSGSWTGYGSSTTNPLV 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01412 328 MobiDBLite consensus disorder prediction 118 132 - -
Pumo4g01412 328 MobiDBLite consensus disorder prediction 105 134 - -
Pumo4g01412 328 ProSitePatterns Zinc finger Dof-type signature. 58 94 IPR003851 GO:0003677|GO:0006355
Pumo4g01412 328 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 43 148 IPR045174 GO:0003700|GO:0006355
Pumo4g01412 328 Pfam Dof domain, zinc finger 54 110 IPR003851 GO:0003677|GO:0006355
Pumo4g01412 328 ProSiteProfiles Zinc finger Dof-type profile. 56 110 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01412 Pumo-Chr4 17931496 17933905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01412 1 299 C2C2-Dof Transcription Factor Family AT5G62940 37.952 1.08e-51 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo4g01412 zf-Dof 2.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01412 - - gmx:100815061 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01412 4 17931496 17933905 Pumo10g02033 10 27015485 27016323 PCT