Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01279 ATGCACGAAATTAGAGACCCTGCAATTCGGCTCTTCGGTCAGAAGATCTCTCCCCCTGAAGATGTTGACAAAGAAGAAAAGGGTGGTGAGGAAAGAGAACAAGAGATAGAACAAGATGAAGAAGACGAAGGAGACAAGGATGCTGGAGTTGAAAATGTTACTGAGGAAGAGCTAGTAACTGACCCTCCTCCAAATGCCGAAGAGACTAAAGGCACATCCCCTGAGGCTATTGTGAACCCCAAAACACCCTCCATAGAAGAAGAAACAGCAAAATCAAAAGGTGACAAATCAGAGAAGGAACAAGGCGAAGCAGCCAACTCACAAGAGAAAACCCTCAAGAAGCCAGATAAAGTGCTACCATGCCCCCGCTGCAAAAGCATGGACACTAAATTCTGTTACTACAACAACTACAATGTCAACCAGCCACGTTATTTCTGCAAAGCCTGTCAAAGATACTGGACTGCAGGTGGCACCATGAGGAATGTTCCTGTGGGGGCAGGACGGCGAAAGAACAAGAACACTACCTCACATTATCGCCACATCACTATCTCTGAGGCCCTTCAAGCAGCTAGAATTGATGCTCAAAATGGAACTCATCTTCCAACTTTGAAAGGCAATGGTAGAGTCCTCAGCTTTGGATTAGATGCACATGCACCTATTTATGATTCCATGGCATCTGTCATGAATCTTGGAGAGAAAAAGGCTCTTAATGGCACAAGAAATGGGTTTCATCATGGCTTTGAGGATCAAAGACTTCCCGTTCCTTGCAAAAGTGTGGAAAATGGTGATGACTCTTCAACTACATCTTCCATTACAGTTTCAAATTCCATAGGAGAAAAGAGCAAAAGCACCTTCCAACAACAGCCAGTGCCCCAAAATCATGGTTTCCTTCCTCAACTTCCATGTATTCCTGGTGTTCCTTGGCCCTATACATGGAATTCTCCAGTTCCTCCACCTACTTTGTGTCCTTCAGGATTTCCCCTACCATTCTATCCTGCTACATTTTGGAACTGTGCCATGCCAGGGAATTGGAATGTTCCATGGTTTTCCTCACATTCATCTGCTTCAAACCCGAAGTCTCCAAGCTCCTGTCCTAATTCTCCAACTTTGGGGAAGCACTCACGGGACGGTGACATGATTAAGCAAGACTCTTTGCACAAAGAAGAAGCTTCAAAGCCAAGAAACGGGTGTGTTTCTGTTTTGGTTCCCAAAACGTTGAGAATTGATGATCCAACAGAAGCTGCAAAGAGTTCCATATGGGCAACTCTAGGAATTAAGAATGAGTCAATGAGTGGGGGAGGTATGTTTAAGGCCTTCCAATCAAAGAAGGATGAAAAGAATCGTGTTGAAGCCTCTCCAGTGTTGATGGCTAACCCTGCAGCTTTGTCTAGATCCCTCAATTTTCAGGAAAACTCCTGA 1419 0.4468 MHEIRDPAIRLFGQKISPPEDVDKEEKGGEEREQEIEQDEEDEGDKDAGVENVTEEELVTDPPPNAEETKGTSPEAIVNPKTPSIEEETAKSKGDKSEKEQGEAANSQEKTLKKPDKVLPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNTTSHYRHITISEALQAARIDAQNGTHLPTLKGNGRVLSFGLDAHAPIYDSMASVMNLGEKKALNGTRNGFHHGFEDQRLPVPCKSVENGDDSSTTSSITVSNSIGEKSKSTFQQQPVPQNHGFLPQLPCIPGVPWPYTWNSPVPPPTLCPSGFPLPFYPATFWNCAMPGNWNVPWFSSHSSASNPKSPSSCPNSPTLGKHSRDGDMIKQDSLHKEEASKPRNGCVSVLVPKTLRIDDPTEAAKSSIWATLGIKNESMSGGGMFKAFQSKKDEKNRVEASPVLMANPAALSRSLNFQENS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01279 472 MobiDBLite consensus disorder prediction 32 50 - -
Pumo4g01279 472 MobiDBLite consensus disorder prediction 17 31 - -
Pumo4g01279 472 MobiDBLite consensus disorder prediction 351 370 - -
Pumo4g01279 472 MobiDBLite consensus disorder prediction 431 452 - -
Pumo4g01279 472 MobiDBLite consensus disorder prediction 1 113 - -
Pumo4g01279 472 MobiDBLite consensus disorder prediction 86 113 - -
Pumo4g01279 472 MobiDBLite consensus disorder prediction 351 377 - -
Pumo4g01279 472 ProSiteProfiles Zinc finger Dof-type profile. 119 173 IPR003851 GO:0003677|GO:0006355
Pumo4g01279 472 MobiDBLite consensus disorder prediction 254 288 - -
Pumo4g01279 472 MobiDBLite consensus disorder prediction 260 288 - -
Pumo4g01279 472 ProSitePatterns Zinc finger Dof-type signature. 121 157 IPR003851 GO:0003677|GO:0006355
Pumo4g01279 472 PANTHER CYCLIC DOF FACTOR 2 4 472 IPR045174 GO:0003700|GO:0006355
Pumo4g01279 472 Pfam Dof domain, zinc finger 116 173 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01279 Pumo-Chr4 16320567 16324022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01279 1 470 C2C2-Dof Transcription Factor Family AT3G47500 51.446 1.05e-130 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo4g01279 zf-Dof 3.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01279 - - gmx:778113 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01279 4 16320567 16324022 Pumo4g01279 4 16320567 16324022 ECH