Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01195 ATGCAGGAAATACACTCCATGGGCGGAGCTAGGTTCTTCTCCGGCGCCGGAGCCGGTGACCGGAGGCTCCGACCCCACCACCAGAACCACCAGGCCCTCAAGTGCCCCCGCTGCGACTCCCTCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCCCAGCCCCGCCACTTCTGCAAAAACTGCCGCCGCTACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGCGGTTGCCGCAAATCCAAACGCTCCTCCAAACCCAACAAAACAGAAACCACTCCGCCTCCGCCACCACCGGACCCCGACCACAACAACTCCCATTCCAGCAGCGACAGCTCCATCCTCACCGCCGCCGCCGCCGCCACCGACGCCGTGTCGGCGCCGGCGATGCTGAACTCCGACTCCAACAACAACATGCAAGAATCAAAGTTATTGATCCCCGTGGACCCTGTTTTGGAAACAAATCCTCTGGAGCAAGGAACAGGGGACTGCGCTGGCATCTTCTCCGAAATCGGTCCTTTCACCAGTTTGATCACTACTCCCACTAACGAGCCGTTGGCGTTCGGGTTCGGTAACTCTACTCTCCCCGATGCGTCGTCGTTTCAGTGGCAGCACCAGAAGGAGTTGAAGTTACCCGAGAGTTCCTTGCTCGATCACACCGTTGATTTGTCGGCTCTGCACAGTAAAACCAGCCACGGAGGATTCGGATCGTTGGATTGGCATGGCGGTGCAGATCAAGGTTTGTTTGATCTTCCTAACACCGTTGATCACGCTTACTGGAGTCACACTCACTGGTCTGACCACGACAATCCTAATCTCTTTCATCTTCCCTGA 846 0.5733 MQEIHSMGGARFFSGAGAGDRRLRPHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSSKPNKTETTPPPPPPDPDHNNSHSSSDSSILTAAAAATDAVSAPAMLNSDSNNNMQESKLLIPVDPVLETNPLEQGTGDCAGIFSEIGPFTSLITTPTNEPLAFGFGNSTLPDASSFQWQHQKELKLPESSLLDHTVDLSALHSKTSHGGFGSLDWHGGADQGLFDLPNTVDHAYWSHTHWSDHDNPNLFHLP 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01195 281 MobiDBLite consensus disorder prediction 78 117 - -
Pumo4g01195 281 MobiDBLite consensus disorder prediction 1 23 - -
Pumo4g01195 281 ProSiteProfiles Zinc finger Dof-type profile. 33 87 IPR003851 GO:0003677|GO:0006355
Pumo4g01195 281 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 196 IPR045174 GO:0003700|GO:0006355
Pumo4g01195 281 Pfam Dof domain, zinc finger 31 87 IPR003851 GO:0003677|GO:0006355
Pumo4g01195 281 ProSitePatterns Zinc finger Dof-type signature. 35 71 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01195 Pumo-Chr4 15242610 15243753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01195 20 278 C2C2-Dof Transcription Factor Family AT5G60850 42.553 8.32e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo4g01195 zf-Dof 2.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01195 - - gmx:778097 415.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01195 4 15242610 15243753 Pumo10g02288 10 32244351 32246726 PCT