Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01139 ATGTATTCCTCAAATACCTCCCTCAACGGCAATGACCTAATCTCGTACCCTAACCAACCATTTTGCTTTAGGCCTTTTTCCTTTGAAAGCAACCCAACTAATTCTTCAAAAGAAGAAACCAATTCCAATTACGCCCTTCCTCTTCCTCCTCCTTTGTCCTTTTTCCAATCTCCCTTTGACGAAAATATCTTCCTCGAACACCACCATGACTTGCTCTTACTCCACCAGTCTCTAGCTGACTCTGGACTCACCAAAAACCTTGACGTTGTGGCTGAAATCTCGCCAATTCCTTGCCCTGGACAAGGCGCCACCGCGATGGAGCACGCTCCAAGGAAGAGATCCAGCAAGAGAGACCGCCACAGTAAGATCAACACAGCACGAGGCCTCAGGGATCGAAGAATGAGGTTGTCCCTTGAAGTTGCAAAGCGGTTTTTCGGGTTGCAAGACATGCTAGGCTTTGACAAGGCCAGCAAAACCGTGGAGTGGCTACTAAACCAAGCAAAGGGTGAAATCAAACAACTTGCAAGGGAGAAAAGCAGTGTTGGTGGTGCTAAGAGTGCATCATCAACTTCGGAATGCGAAGGGGTGTCTAGCTTGGACGAGGTTGTAGTGAGTGGAGTTAACGAAGAGCAAGAAAGGGAGACACCAAACATGAAGAGAAGAACAAGTAAGGTTTGTAGAAAGAGTGCATTCAATCCTATTGACAAGGAATCGAGAGAAAAGGCAAGAGAAAGGGCAAGAGAAAGAACAAGAGAGAAGATGAGAGCTCGAAGAGTACTTGCAGATGCATCAAACCTGAACCGTTTGAGTTCTTGGAACCCCTTTGAAACGGTTGAAGACTCTGCGGGTACTCAAAGCCAAAGCGTGAATCATCCCTCCTTGGATGTGCACCTTCCTGAGGCTGAAGAACCAAGTTCTCACGCGAAGGAGCATTTGGGAGAGAACATGGCGCATGAAGATAATTCTTTGGTGATCATGAACAAGCAGTGGAGCCCAACTATGATGTTCAATTCTCTCAACAACTCAGGAATCCTTCAAGAACATCAATTTGCAGAATTTCAGTCCTTGGGGAAACATTGGGAAGCCTACAACAATCACATCTAA 1104 0.462 MYSSNTSLNGNDLISYPNQPFCFRPFSFESNPTNSSKEETNSNYALPLPPPLSFFQSPFDENIFLEHHHDLLLLHQSLADSGLTKNLDVVAEISPIPCPGQGATAMEHAPRKRSSKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVEWLLNQAKGEIKQLAREKSSVGGAKSASSTSECEGVSSLDEVVVSGVNEEQERETPNMKRRTSKVCRKSAFNPIDKESREKARERARERTREKMRARRVLADASNLNRLSSWNPFETVEDSAGTQSQSVNHPSLDVHLPEAEEPSSHAKEHLGENMAHEDNSLVIMNKQWSPTMMFNSLNNSGILQEHQFAEFQSLGKHWEAYNNHI 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01139 367 MobiDBLite consensus disorder prediction 206 221 - -
Pumo4g01139 367 MobiDBLite consensus disorder prediction 182 196 - -
Pumo4g01139 367 ProSiteProfiles R domain profile. 236 253 IPR017888 -
Pumo4g01139 367 Pfam TCP family transcription factor 115 256 IPR017887 -
Pumo4g01139 367 ProSiteProfiles TCP domain profile. 116 174 IPR017887 -
Pumo4g01139 367 MobiDBLite consensus disorder prediction 230 255 - -
Pumo4g01139 367 MobiDBLite consensus disorder prediction 100 121 - -
Pumo4g01139 367 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 90 364 IPR005333 GO:0003700
Pumo4g01139 367 MobiDBLite consensus disorder prediction 175 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01139 Pumo-Chr4 14654232 14656027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01139 112 250 TCP Transcription Factor Family AT3G18550 44.937 1.60e-28 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pumo4g01139 TCP 2.1e-45 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00611 5 11941193 11943063 Pumo4g01139 4 14654232 14656027 ECH
Pumo10g02331 10 33654108 33656047 Pumo4g01139 4 14654232 14656027 ECH
Pumo4g01139 4 14654232 14656027 Pumo4g01139 4 14654232 14656027 ECH