Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03008 ATGGAGAGTGGGTGGAAGCCTGAGGTTGAGATGTCACCAAATTGTCCTAGGTGTGGTTCTTCCAACACCAAGTTCTGCTACTACAACAACTACAGCTTAACTCAACCAAGGTACTTTTGCAAGGGGTGCAGAAGGTACTGGACCAAAGGAGGGTCTCTCCGCAATGTGCCTGTTGGAGGTGGCTGCAGGAAGAACAGAAGAGGTAACAAGACCCTATTGAGACAATCCATTGATGGTTTCACTTTCAAAAACTCACCACCACCTTGTGGCAATAATGCCACAGATCATAACAATAACCCTGTTGGGCATTCTTATGATCCTAGAATAAGGACTTCTTTGGCTTCTAGCTCCTCCTCAGTGGTGAGTGATGGTCCAAACATTGATCTTGCACTAGTGTATGCAAATTTCCTCAACCAAAAGCCCAATTCTGAAGCCATTGAGAGTACTAATCCAGATCAAGTGCAAACAGTTTTTGATCCTTCTCTAGAAAATAATAATTCAAGGCTATCAAACACAGATGTTGTTGGCCCAAGTGCTTTGCCTGAAGAACTTGGTCTTTCTGGGTGTTTGAGTCTTCCTGAACAACCACACACACATTCTAGTGAGGCTAATAATAATAATCATAACCAATTGTGCTATGGTGAGTTCAACTCTATGCAGACACTTCAAAAAGATGGAATTGAGCAATGTAGTAGTCATGGTGGTGCTATGAATTTTGAGCTGCCACCATTGCCTGGTGAAGAGGAAGCCTCACATGATCATCACATGATGTGGTCAAATTCTGAGATGATGATAAATCATCATGCATTTCAAGTCACACAACCACCACTTCTTGGTCCTGAAGTTCATGATGCAGACTTGTTAATAGGTAATTGGAGCCCCTTTGATTTTCCAAAAGATGCTTCTTTTTCCAGGCCTTGA 921 0.4256 MESGWKPEVEMSPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGNKTLLRQSIDGFTFKNSPPPCGNNATDHNNNPVGHSYDPRIRTSLASSSSSVVSDGPNIDLALVYANFLNQKPNSEAIESTNPDQVQTVFDPSLENNNSRLSNTDVVGPSALPEELGLSGCLSLPEQPHTHSSEANNNNHNQLCYGEFNSMQTLQKDGIEQCSSHGGAMNFELPPLPGEEEASHDHHMMWSNSEMMINHHAFQVTQPPLLGPEVHDADLLIGNWSPFDFPKDASFSRP 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03008 306 ProSiteProfiles Zinc finger Dof-type profile. 13 67 IPR003851 GO:0003677|GO:0006355
Pumo3g03008 306 MobiDBLite consensus disorder prediction 158 174 - -
Pumo3g03008 306 MobiDBLite consensus disorder prediction 158 206 - -
Pumo3g03008 306 ProSitePatterns Zinc finger Dof-type signature. 15 51 IPR003851 GO:0003677|GO:0006355
Pumo3g03008 306 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 10 199 IPR045174 GO:0003700|GO:0006355
Pumo3g03008 306 Pfam Dof domain, zinc finger 13 67 IPR003851 GO:0003677|GO:0006355
Pumo3g03008 306 MobiDBLite consensus disorder prediction 84 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03008 Pumo-Chr3 54435294 54436214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03008 5 301 C2C2-Dof Transcription Factor Family AT3G52440 38.907 7.05e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo3g03008 zf-Dof 4.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03008 - - gmx:100794208 566.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03008 3 54435294 54436214 Pumo3g03008 3 54435294 54436214 ECH
Pumo5g03271 5 81870146 81870403 Pumo3g03008 3 54435294 54436214 PCT