Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01745 ATGGACACAGCTCAGTGGCCACAGGAGATGGTGGTGAAACCAATAGAAGATATAGTAGTGACAAATAATACATGTCCAAAGGCTGCAGGTGCTGTGGAAAGGAAGCCAAGGCCACAGAAAGAACAAGCTCTTAACTGTCCAAGGTGTCATTCAATTAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACACAGCCTAGGTATTTCTGCAAGACTTGTAGAAGGTATTGGACTGAGGGTGGATCCCTCAGAAACATCCCTGTAGGAGGTGGCTCTAGGAAAAACAAGAGATCTTCTGCTTCTTGTTCCACACCTAATAATAACAACACCAATTCAACCAATAAGAAGCTTCCTGATCTGGTTATCACACCTCCAACTTTATCACACACTCAAAACCCTAAGAGTAATAATATCCATCAAGGCCAGGATCTCAATTTGGCTTTCCCAGCCACCACCACCCCAGATTTCAGAAAAATCTCTGAATTGGTCCAACAACATAACAACAACAATAGTAGCAACAGCATGTCAGCTTCAGCTTCTTCTTCTTCAACCACCACCACCACTACAACTAAAACTTCCACTTCTCACCTTTCTGCATTGGAGCTTCTTACTGGGATCACTTCAAGCTCCACTGGTTTGAATTCCTTCATGCCTTTGCCGGTTCCAGCTGATCCAAATTCTGTCTACACATGTGGGTTTCCTCTGCAAGATTTCAAGCCAACCTTGAATTTCTCTTTAGATGGGATTGGAAACGGGTACGCAAGCCTTCATAATGTTCAAAGTGGGAGGCTCTTGTTTCCATTTGGGGACTTAAAACACGTTTCTAGCACCACCACCACAATGGATCAGAAGCAACAAGGAGATTCAACTGGGTATTGGACTGGAATGTTAGGTGGAGGATCATGGTAA 912 0.4386 MDTAQWPQEMVVKPIEDIVVTNNTCPKAAGAVERKPRPQKEQALNCPRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSASCSTPNNNNTNSTNKKLPDLVITPPTLSHTQNPKSNNIHQGQDLNLAFPATTTPDFRKISELVQQHNNNNSSNSMSASASSSSTTTTTTTKTSTSHLSALELLTGITSSSTGLNSFMPLPVPADPNSVYTCGFPLQDFKPTLNFSLDGIGNGYASLHNVQSGRLLFPFGDLKHVSSTTTTMDQKQQGDSTGYWTGMLGGGSW 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01745 303 ProSitePatterns Zinc finger Dof-type signature. 46 82 IPR003851 GO:0003677|GO:0006355
Pumo3g01745 303 MobiDBLite consensus disorder prediction 85 143 - -
Pumo3g01745 303 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 33 187 IPR045174 GO:0003700|GO:0006355
Pumo3g01745 303 Pfam Dof domain, zinc finger 42 98 IPR003851 GO:0003677|GO:0006355
Pumo3g01745 303 MobiDBLite consensus disorder prediction 168 195 - -
Pumo3g01745 303 MobiDBLite consensus disorder prediction 93 143 - -
Pumo3g01745 303 ProSiteProfiles Zinc finger Dof-type profile. 44 98 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01745 Pumo-Chr3 27822011 27824246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01745 1 303 C2C2-Dof Transcription Factor Family AT4G24060 44.538 9.41e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo3g01745 zf-Dof 3.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01745 - - pvu:PHAVU_001G080800g 476.092