Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01375 ATGTATTTCTTCACTGAGAAAATGCAGCGTTTGAAGATGGGATTCCCTGACTACATCCAAACACTGGAAGAAGAACGCCGTAAGATTCAGATGTTCTCCAAAGAGCTTCCTCTATCCTTGGAACTGGTCACTCAAGCCATTGAAGCTTGCAAGCAGCAATTGTCAGGCACCACGAGTGAGAATAATTTGAATGGTCACTCGGAGTGTTCGGAGCAGACAACATCAACGGAAGGGCCTGTTTTGGAGGAGTTTATTCCAATCAAGAAAAGGGCATCATCATCATCCCCTTGTTGTGATGAAGAGGATGAAAGTGATGAGCAACATTCTCACAAGGAAAGGGTTTCAAAGGAGAATAACAAGAACAGTGATAAGAGGAAATCAGACTGGCTTAGATCTGTTCAGTTGTGGAATCCAGATCCCCCTGCTGAGGAGGATGTGACTAGGAAAGTGCCTGGGGTGGAATTGAAGAGAAGTGGAAGTGGTGGTGGTGCTTTCCAGCCATTCCACAAGGAAGAAAGAGGTGCAAAGACAAGTGAATCATTGAGTAAAGCACCATCTTCAACCCAGGCAGCTGTTGCGAGTTCTAACGCCGTAGAACCCGCAGCAGAAAAATCTCTGAATGAGGGACAGAGAAAGCAGCGTAGGTGCTGGTCACAGGACTTGCATAAGCGCTTCTTGCATGCCCTTCAGCAGCTTGGGGGTCCAGATTCTGCCACTCCAAAGCAAATCAGAGAGCTAATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTGCAGAAATACCGTTTGCACACTAGAAGGCCAAGTCCCATGGTTCACAACAGTTCCAATCCACAAGCAGCACCTTTTGTCCTTGTAGGGAACATTTTTGTCCAATCACCAGAATATGCAGCTGTAGCTACCTCAACAGCATCAAGAGAAGTGACCACAGTTGCAGCACCAGCTGGAATTTATGCACCAGTGGCCACACATCCTACACCTGTTTCACACCCACCAGCTGATTCAATTAAGAAGCCACAGTTTAAGAAAGTAAAGCTGTTTGAGCATTCAAATTCAGATGAAAGGGCTAATCACAGTGAAGGAGCCGTTCATTCAAATTCCCCTACCTCATCCTCCTCCACACATACCTCTACTTCCCCTGGCTATTGA 1158 0.4611 MYFFTEKMQRLKMGFPDYIQTLEEERRKIQMFSKELPLSLELVTQAIEACKQQLSGTTSENNLNGHSECSEQTTSTEGPVLEEFIPIKKRASSSSPCCDEEDESDEQHSHKERVSKENNKNSDKRKSDWLRSVQLWNPDPPAEEDVTRKVPGVELKRSGSGGGAFQPFHKEERGAKTSESLSKAPSSTQAAVASSNAVEPAAEKSLNEGQRKQRRCWSQDLHKRFLHALQQLGGPDSATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSPMVHNSSNPQAAPFVLVGNIFVQSPEYAAVATSTASREVTTVAAPAGIYAPVATHPTPVSHPPADSIKKPQFKKVKLFEHSNSDERANHSEGAVHSNSPTSSSSTHTSTSPGY 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01375 385 MobiDBLite consensus disorder prediction 56 79 - -
Pumo3g01375 385 FunFam Myb family transcription factor 211 269 - -
Pumo3g01375 385 Pfam Myb-like DNA-binding domain 214 265 IPR001005 -
Pumo3g01375 385 Gene3D - 211 269 - -
Pumo3g01375 385 MobiDBLite consensus disorder prediction 364 385 - -
Pumo3g01375 385 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 209 269 IPR017930 -
Pumo3g01375 385 MobiDBLite consensus disorder prediction 103 130 - -
Pumo3g01375 385 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Pumo3g01375 385 MobiDBLite consensus disorder prediction 349 385 - -
Pumo3g01375 385 MobiDBLite consensus disorder prediction 349 363 - -
Pumo3g01375 385 MobiDBLite consensus disorder prediction 56 213 - -
Pumo3g01375 385 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 6 333 IPR044787 GO:0003700|GO:0006355
Pumo3g01375 385 NCBIfam myb-like DNA-binding domain, SHAQKYF class 212 267 IPR006447 GO:0003677
Pumo3g01375 385 MobiDBLite consensus disorder prediction 179 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01375 Pumo-Chr3 21781911 21784255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01375 4 374 G2-like Transcription Factor Family AT1G68670 44.020 2.23e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo3g01375 Myb_DNA-binding 1.8e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01375 3 21781911 21784255 Pumo3g01375 3 21781911 21784255 ECH