Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01373 ATGGATGGAGGCAGCGTTTCGGACGAAACCACCACAACCAGCGACTCTCTTTCCGTACCGGCGAATCTATCGCCGCCGCCGCTCAGCCGCGTCGGCAGCGGCGCCAGCGCGGTCGTCGACCCCGACGGCTGTGGCGTTTCCGGCGAGGCCGAGTCCCGGAAGCTCCCGTCGTCGAAATACAAAGGCGTGGTGCCGCAACCGAACGGTCGTTGGGGAGCTCAGATTTACGAGAAGCACCAGCGCGTGTGGCTCGGCACCTTCAACGAGGAAGACGAAGCCGCCAGAGCCTACGACATCGCCGCGTTGCGCTTCCGCGGCCGCGACGCCGTCACGAACTTCAAGCCTCTCGCCGGCGCCGCCGACGACGCCGAGTCCGAGTTCCTCAACTCGCATTCCAAGTCCGAGATTGTCGACATGCTCCGCAAGCACACCTACGACGATGAGCTCCAGCAGAGCACGCGCGGCGGGAGGCGCCGCCGCGACAACGATGCCGCGTCGAGCGGCTCGTGCGACGCGAAGGCGCGTGAGCCGTTATTCGAGAAAACGGTTACGCCGAGCGACGTCGGGAAGCTGAATCGATTAGTGATACCGAAGCAGCACGCGGAGAAGCACTTTCCGTTGAGCGGAAGCAGCGGATCCGGCGACGGAACCTCGCCGTGCGCGGCGGTGGCGGCATCGAAGGGAGTGCTGTTGAACTTCGAGGACGTTGGAGGGAAAGTGTGGCGGTTTCGTTACTCGTATTGGAACAGTAGCCAGAGCTACGTGCTTACCAAAGGATGGAGCCGGTTCGTGAAGGAGAAGAATCTTCGAGCCGGTGATGCGGTTCGGTTCTTCAAGTCAACCGGACCGGACCGTCATCTTTATATAGACTGCAAGGCGAGGAGCAGTAACGGTGTTGGCGACGTTGATAATAAAGCTGGCGGTTTGTTTATTCCGGTTGGACCGGTTGTTGAACCTGTTCAGATGGTTCGTCTTTTCGGGGTCAACCTTTTGAAACTACCCGTACCCGGTTCGGATGGTGTCGGGGCTGGCTGTGACAGGAAACGGAAAGAGATGGAACTGTTTGCATTAGAATGTAGCAAGAAGTTAAAAGTAATTGGAGCTTTGTAA 1110 0.5928 MDGGSVSDETTTTSDSLSVPANLSPPPLSRVGSGASAVVDPDGCGVSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAALRFRGRDAVTNFKPLAGAADDAESEFLNSHSKSEIVDMLRKHTYDDELQQSTRGGRRRRDNDAASSGSCDAKAREPLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLSGSSGSGDGTSPCAAVAASKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAVRFFKSTGPDRHLYIDCKARSSNGVGDVDNKAGGLFIPVGPVVEPVQMVRLFGVNLLKLPVPGSDGVGAGCDRKRKEMELFALECSKKLKVIGAL 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01373 369 MobiDBLite consensus disorder prediction 1 69 - -
Pumo3g01373 369 MobiDBLite consensus disorder prediction 147 171 - -
Pumo3g01373 369 ProSiteProfiles AP2/ERF domain profile. 59 114 IPR001471 GO:0003700|GO:0006355
Pumo3g01373 369 Gene3D - 166 305 IPR015300 -
Pumo3g01373 369 ProSiteProfiles B3 DNA-binding domain profile. 179 295 IPR003340 GO:0003677
Pumo3g01373 369 Pfam B3 DNA binding domain 179 278 IPR003340 GO:0003677
Pumo3g01373 369 SUPERFAMILY DNA-binding domain 58 114 IPR016177 GO:0003677
Pumo3g01373 369 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 54 342 IPR044800 GO:0003700
Pumo3g01373 369 SMART B3_2 179 294 IPR003340 GO:0003677
Pumo3g01373 369 CDD B3_DNA 177 289 IPR003340 GO:0003677
Pumo3g01373 369 Pfam AP2 domain 58 106 IPR001471 GO:0003700|GO:0006355
Pumo3g01373 369 SUPERFAMILY DNA-binding pseudobarrel domain 176 293 IPR015300 -
Pumo3g01373 369 MobiDBLite consensus disorder prediction 147 166 - -
Pumo3g01373 369 CDD AP2 58 113 IPR001471 GO:0003700|GO:0006355
Pumo3g01373 369 MobiDBLite consensus disorder prediction 1 23 - -
Pumo3g01373 369 Gene3D AP2/ERF domain 58 115 IPR036955 GO:0003700|GO:0006355
Pumo3g01373 369 SMART rav1_2 59 120 IPR001471 GO:0003700|GO:0006355
Pumo3g01373 369 FunFam AP2 domain-containing protein RAP2.8 58 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01373 Pumo-Chr3 21750868 21752265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01373 5 369 B3 DNA Binding Superfamily AT1G25560 58.718 8.42e-138 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Pumo3g01373 B3 1.6e-25 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01373 3 21750868 21752265 Pumo3g01373 3 21750868 21752265 ECH