Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01365 ATGATACAGGAATTCGAAGATCAAGGGCAGTGTTCTTCTCAAGCGATCAATAACTACCACCAAGCCTATCAAGAGCAGCTTCTCCTTCAGCAACAGATGCAGCAACAAAACAATGATATCTATGGTGGAGGAGGAGGAGGATTGAACATGTACCCTGGTGGTGAAGTTTCTCCAATCATGCATCATCATCATCATCATCAACCATGGTCTATGCCTCATCATCAGGTTCATCACCACCCCATCAACCATGACCCTTTTCTTGTCCCTCCCCAACCTTCACCCTATGCAAGTTTGTTCAACAGAAGGGGTCCTTCTCTTCAGTTTGCATATGACCATCATGGTTCATCTTCTGACCATCTTAGGATCATATCTGACACCCTTGGACCGGTGGTTCAACCCGGTTCAGCAGCACCCTTTGGCCTCCAAACCGAGCTGGCCAAGATGACTGCTCAAGAAATCATGGAGGCTAAGGCCCTTGCAGCTTCCAAGAGTCACAGTGAAGCTGAAAGGAGACGCAGGGAGAGAATCAATAACCATCTTGCCAAGCTCCGCAGCTTGTTGCCTAGCACAACCAAAACAGATAAAGCATCATTGCTAGCAGAAGTGATTCAGCATGTGAAGGAGCTGAAGCGTCAAACCTCACTGATAGCAGAATCGAGTCCGGTTCCTACGGAGGCTGATGAGTTAACAGTAGTGGTGGATGAAGCTGATGAAGATGGCAATTCTGTGATCAAAGCCTCTTTGTGCTGCGAAGATAGGTCAGATCTGTTCCCTGAACTCATCAAGACCTTGAAAGCGTTGAGGCTAAGAACCCTTAAAGCTGAGATCACAACGCTCGGTGGTCGTGTCAAGAACGTGTTGTTCATCACTGGAGAAGAAGGAGACTCAAGCAGTGGCAGTGAAGACCATAGCCACCAGCAACAGTACTGCATTAGCTCAATACAAGAAGCACTTAAGGCAGTAATGGAGAAGAGCGTTGGGGATGAGTCTGCTTCTGCAAATATTAAGAGACAAAGGACCAATATAATATCAATGTCCTAG 1041 0.4688 MIQEFEDQGQCSSQAINNYHQAYQEQLLLQQQMQQQNNDIYGGGGGGLNMYPGGEVSPIMHHHHHHQPWSMPHHQVHHHPINHDPFLVPPQPSPYASLFNRRGPSLQFAYDHHGSSSDHLRIISDTLGPVVQPGSAAPFGLQTELAKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAESSPVPTEADELTVVVDEADEDGNSVIKASLCCEDRSDLFPELIKTLKALRLRTLKAEITTLGGRVKNVLFITGEEGDSSSGSEDHSHQQQYCISSIQEALKAVMEKSVGDESASANIKRQRTNIISMS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01365 346 CDD bHLH_AtAIG1_like 155 234 - -
Pumo3g01365 346 Pfam Helix-loop-helix DNA-binding domain 163 209 IPR011598 GO:0046983
Pumo3g01365 346 PANTHER TRANSCRIPTION FACTOR BHLH30 35 342 IPR045847 GO:0003700|GO:0006355
Pumo3g01365 346 CDD ACT_UUR-ACR-like 247 322 - -
Pumo3g01365 346 Gene3D - 155 215 IPR036638 GO:0046983
Pumo3g01365 346 FunFam transcription factor bHLH30 155 218 - -
Pumo3g01365 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 216 IPR036638 GO:0046983
Pumo3g01365 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Pumo3g01365 346 SMART finulus 166 215 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01365 Pumo-Chr3 21632713 21635332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01365 12 339 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 55.682 1.07e-105 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo3g01365 HLH 1.7e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01365 3 21632713 21635332 Pumo3g01365 3 21632713 21635332 ECH