Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01090 ATGATGGCTTCCAAAAGGCAAGCATTGATCCTAATTGTGTTGTCCCTCTTGGCATTGTCCTTCACCACAATGGCGTCACAGGGCAGTGGTGGCATTGCCATATACTGGGGCCAGAACAATGGCGATGGCACCTTGAGTTCCACATGTGACACTGGAAACTATGAGATTGTTCTCCTAGCTTTCCTCAATCAGTTTGGTTGTGGCAGACCTCCAGCATGGAACTTCGCTGGCCACTGTGGGGACTGGGATCCTTGCACCAAACTACAACCCGAAATACAACACTGCCAAAGCAAAGGTGTGAAAGTGTTCCTTTCCCTCGGAGGTGCTTCTGGAACCTACTCCCTCTGCTCAGCCCAGGATGGAAAAGATGTTGCCCATTACCTCTATCAAAACTTCCTCAGTGGCCAATTTGGTCCACTTGGAAGTGTATCATTGGACGGCATCGATCTTGACATTGAAGGTGGTGGTTCCAACCTTTATTATGACGACCTCGTCAAGGAACTAGACCGTCTCAGACACCAAAACCGCTACTTTTACTTGTCCGCAGCCCCACAATGTTTTATGCCAGATTACTACCTCGACAAAGCCATCAAAACTGGCCTTCTCAATTATGTGTTTGTTCAGTTCTACAATAACCCTCCTTGTCAATATTCATCTGATGGCAGCACTGCAGCTCTCTTTAAGTCATGGGACGATTGGACTTCATATGTTCTCCCCAATAACACTGTTTTCTTGGGACTACCAGCATCGCCTGACGCAGCTCCAAGTGGCGGTTATATCCCACCAAAAGACCTCATTGAAAAGGTACTTCCCTATGTCAAGCAAGCTTCCAACTATGGAGGAGTTATGCTATGGGACAGATACCATGATGTTTTAAACCATTACAGCGATCAGATAAAGGATTACGTTCCAAAATATGCATTGAGCTTTGTGACAGCAATTTATGAGTGTGTGTCTGCAGCTATGCACCGAATCTTACCCAAACCCAACAAACCATATTAG 1002 0.4621 MMASKRQALILIVLSLLALSFTTMASQGSGGIAIYWGQNNGDGTLSSTCDTGNYEIVLLAFLNQFGCGRPPAWNFAGHCGDWDPCTKLQPEIQHCQSKGVKVFLSLGGASGTYSLCSAQDGKDVAHYLYQNFLSGQFGPLGSVSLDGIDLDIEGGGSNLYYDDLVKELDRLRHQNRYFYLSAAPQCFMPDYYLDKAIKTGLLNYVFVQFYNNPPCQYSSDGSTAALFKSWDDWTSYVLPNNTVFLGLPASPDAAPSGGYIPPKDLIEKVLPYVKQASNYGGVMLWDRYHDVLNHYSDQIKDYVPKYALSFVTAIYECVSAAMHRILPKPNKPY 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01090 333 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 30 306 IPR001223 GO:0005975
Pumo3g01090 333 SUPERFAMILY (Trans)glycosidases 28 300 IPR017853 -
Pumo3g01090 333 Gene3D Glycosidases 28 319 - -
Pumo3g01090 333 PANTHER ENDOCHITINASE 12 300 - -
Pumo3g01090 333 Pfam Glycosyl hydrolases family 18 32 290 IPR001223 GO:0005975
Pumo3g01090 333 CDD GH18_hevamine_XipI_class_III 30 301 IPR045321 -
Pumo3g01090 333 FunFam Acidic endochitinase SE2 30 303 - -
Pumo3g01090 333 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 145 153 IPR001579 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01090 Pumo-Chr3 17398685 17399686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01090 10 299 Glycoside Hydrolase AT5G24090 47.440 1.02e-88 266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g00522 11 18696105 18697144 Pumo3g01090 3 17398685 17399686 ECH
Pumo3g01090 3 17398685 17399686 Pumo3g01090 3 17398685 17399686 ECH
Pumo6g02483 6 57017066 57018750 Pumo3g01090 3 17398685 17399686 PCT