LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo3g00614	ATGGCAATCCAGCACCACAATGACCAACTAGAACATAATGAAAATGTCTCATCTGTCCTTGATGCCCTTTACTGTGATGAAGGAAAGTGGGAAGATGAAGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAAGTGAAGTGACAACAAACAATGTTGATGGGGTGCACCACACTGGAACTTCTCTTTTCCCTCTGCTCTTGTTGGAGCAAGACTTGTTCTGGGAAGATGAGGAACTAAACTCTCTCTTTTCCAAAGAGAAGGTTCAACATGAAGAAGCCTATGGCTATAACAATCTCAACAGTGATGATAATAATAATAATAATAATGATGATGACAAAAATAATAATGATGATGTGCATTTGGACTCTTGTCTCTCTCAGCCTCGTCGTGAGGCAGTGGAATGGATGTTTAAAGTCAATGCTCACTATGGATTCTCTGCTCTCACTGCAACACTGGCCGTTATTTACCTGGATAGGTTCCTTCTAAGCTTCCATTTTCAAAGGGAGAAGCCTTGGATGATCCAGCTTGTGGCTGTCACTTGCATCTCTTTGGCTGCAAAAGTTGAAGAAACTCAAGTGCCTCTTCTCTTGGACCTTCAAGTGCAAGACACAAAGTATGTGTTTGAGGCAAAGACTATTCAGAGAATGGAGCTGCTGGTGCTGTCCACCCTCAAATGGAAGATGCACCCCGTGACCCCACTCTCATTTCTAGATCACATTATAAGGAGGCTTGGATTGAAAACTCATCTTCACTGGGAGTTTCTCAGGCGCTGTGAGCATCTTCTTCTGTCTGTGCTTCTAGATTCAAGATTTGTTGGGTGTCTTCCTTCTGTGTTGGCCACTGCAACAATGCTGCATGTTATAGACCAGATTGAACACAGTGGTGGGATGGAATACAAAAATCAGCTTCTGAGTGTTCTCAAAATTAGCAAGGAGAAAGTAGTTGAATGTTATAATGCCATTCTCCAACTCTCAAATGCCAATAATTATGGTCATAACAACACTAGCAAGCGCAAGTATGAGCAAATCCCAGCCAGCCCAAGTGGCGTAATTGATGCTGCATTTGGCTCTGATGGTTCCAACGATTCGTGGGCAGTGGGGTCATCATTATATTCACCACAAGAGCCTCTGTTCAAGAAGAGCAGAACCCAAGGACAACAAATGAAATTGTCACCACTTAACCGGGTCATTGTCGGAATTGTTGGCACCTCTCCTTAA	1215	0.4313	MAIQHHNDQLEHNENVSSVLDALYCDEGKWEDEEEEEEEEEEESEVTTNNVDGVHHTGTSLFPLLLLEQDLFWEDEELNSLFSKEKVQHEEAYGYNNLNSDDNNNNNNDDDKNNNDDVHLDSCLSQPRREAVEWMFKVNAHYGFSALTATLAVIYLDRFLLSFHFQREKPWMIQLVAVTCISLAAKVEETQVPLLLDLQVQDTKYVFEAKTIQRMELLVLSTLKWKMHPVTPLSFLDHIIRRLGLKTHLHWEFLRRCEHLLLSVLLDSRFVGCLPSVLATATMLHVIDQIEHSGGMEYKNQLLSVLKISKEKVVECYNAILQLSNANNYGHNNTSKRKYEQIPASPSGVIDAAFGSDGSNDSWAVGSSLYSPQEPLFKKSRTQGQQMKLSPLNRVIVGIVGTSP	404

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo3g00614	404	MobiDBLite	consensus disorder prediction	105	121	-	-
	Pumo3g00614	404	Gene3D	-	124	228	-	-
	Pumo3g00614	404	Pfam	Cyclin, N-terminal domain	124	227	IPR006671	-
	Pumo3g00614	404	Pfam	Cyclin, C-terminal domain	230	341	IPR004367	-
	Pumo3g00614	404	SUPERFAMILY	Cyclin-like	123	228	IPR036915	-
	Pumo3g00614	404	SMART	cyclin_7	133	221	IPR013763	-
	Pumo3g00614	404	MobiDBLite	consensus disorder prediction	29	47	-	-
	Pumo3g00614	404	Gene3D	-	229	320	-	-
	Pumo3g00614	404	CDD	CYCLIN_AtCycD-like_rpt1	128	225	-	-
	Pumo3g00614	404	SUPERFAMILY	Cyclin-like	231	340	IPR036915	-
	Pumo3g00614	404	ProSitePatterns	Cyclins signature.	128	159	IPR006671	-
	Pumo3g00614	404	CDD	CYCLIN_AtCycD-like_rpt2	230	320	-	-
	Pumo3g00614	404	MobiDBLite	consensus disorder prediction	95	121	-	-
	Pumo3g00614	404	MobiDBLite	consensus disorder prediction	29	54	-	-
	Pumo3g00614	404	FunFam	CYCLIN D32	229	318	-	-
	Pumo3g00614	404	SMART	Cyclin_C_2	230	358	IPR004367	-
	Pumo3g00614	404	FunFam	D3-type cyclin	121	228	-	-
	Pumo3g00614	404	PANTHER	CYCLINS	52	339	IPR039361	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo3g00614	Pumo-Chr3	9258452	9260745	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo3g00614	1	323	Core Cell Cycle Gene Families	AT4G34160	54.489	1.36e-112	333

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo3g00614	3	9258452	9260745	Pumo3g00614	3	9258452	9260745	ECH
	Pumo9g00302	9	4830824	4832921	Pumo3g00614	3	9258452	9260745	ECH
	Pumo8g01985	8	56474942	56476842	Pumo3g00614	3	9258452	9260745	PCT