Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00603 ATGGCACTCCTCCGATCATCCAAAAGATTCACCACTCACAGTCTCCTTCCCCTCACAAAATCTTCTTCAACATTCCTTCCACCTTCGCCAACTTCAAATTTTGACCACCATCACTCCATACCCACAAATCAACTCACCCAAATCCCCAATGGGCCTCCAAAAACCCACACGGCCCAACCTCGGCCCACCCCCGACGCCGAAACAATCTGCAGAATCCTATCCACCACCCGCGACTCCACCGTCGAAGCCTCTCTCGCCGCCGTTCCGGCGAAGCCCTCGCCGGAGCTGGTCCTCGAGGTCCTGAACAAACTCAGCAACGCCGGTGTCCTCGCGCTCTCGTTCTTCCGTTGGGCCGAGAAGCAAAGCGAGTTCAAACACACCACAGAGACCTTCCACGCGTTGATCGAAGCACTGGGTAAGATCAGACAGTTCAAAGTGATTTGGACTCTGGTCAACGACATGAAGCAACGAAAGTTGCTTGCTTCTGACACTTTTAGCCTCGTTGCTCGACGATACGCGAGAGCAGGGAAGGCCAAGGAAGCAATCGAGACGTTCGAGAAGATGGAACACTACGGTTTGAAACCGCACATGTCGGATTTCAATAGGTTGATCGATGTTTTATGTAAATCCAAGTGTGTGGAGAAGGCACACGAGGTGTTTGATAAAATGCGGCATTTAAGGTTGGACCCTGATATCAAGTCCTACACCATTTTATTAGAAGGGTGGAGTCACCAGCAGAACTGGATAAAAGTTAATGAGGTGTGTAGGGAGATGGAGGATGAAGGGTTTCAGCTTGATGTTGTTGCGTATGGGATAATCATGAATGCGTATTGCAAGGCTAAGAAATTTGATGAAGCCATTGGGTTGTACCATGAGATGAAAGCTAAGGGTGTGAAGCCTAGTCCCCATGTGTATTGCACTTTGATTAATGGTTTGGGTTCTGATAAGAGATTGGACCAAGCTCTTGAGTTTTTTGAGGTGTCAAAGGCTAGTGGTTTTGCACCGGAGGCTCCCACTTACAATGCTGTTGTTGGGGCTTATTGCTGGTCTTTGCGGATGGATGATGCCTTTAGGATGGTTGGTGAGATGAAAAAATGTGGGATTGGTCCAAATTCTCGAACGTTTGACATTATACTTCATCACCTGATAAAGGGTCGTAGGACTGAAGAGGCTTGCTCGATTTTCCAGAGGATGAGTGGTGGTGAGTTTGGGTGTGAGCCGAGTGTGAGCACGTATGAGATCATGGTGAGGATGTTTTGTAATGAAGAGCGGTTGGATATGGCGATGGCGGTTTGGGATGAGATGAAAGGGAAGGGAATTCTTCCTGGAATGCATATGTTCTCTACGTTGGTCTGTGCCTTGTGCCATGACAGTAAGTTGGATGAAGCGTGTAAGTACTTTCAAGAAATGTTGGATGTGGGCATTCGGCCTCCTGCCAAAATGTTTAGTACTTTGAAGGAAGCTCTAGTTGATGCTGGGATGGAGCATATTGCCATGCATTTCGCTTTGAAAATTGATAAACTCAGGAAATCTCCGTTAATTGCTTGA 1548 0.4774 MALLRSSKRFTTHSLLPLTKSSSTFLPPSPTSNFDHHHSIPTNQLTQIPNGPPKTHTAQPRPTPDAETICRILSTTRDSTVEASLAAVPAKPSPELVLEVLNKLSNAGVLALSFFRWAEKQSEFKHTTETFHALIEALGKIRQFKVIWTLVNDMKQRKLLASDTFSLVARRYARAGKAKEAIETFEKMEHYGLKPHMSDFNRLIDVLCKSKCVEKAHEVFDKMRHLRLDPDIKSYTILLEGWSHQQNWIKVNEVCREMEDEGFQLDVVAYGIIMNAYCKAKKFDEAIGLYHEMKAKGVKPSPHVYCTLINGLGSDKRLDQALEFFEVSKASGFAPEAPTYNAVVGAYCWSLRMDDAFRMVGEMKKCGIGPNSRTFDIILHHLIKGRRTEEACSIFQRMSGGEFGCEPSVSTYEIMVRMFCNEERLDMAMAVWDEMKGKGILPGMHMFSTLVCALCHDSKLDEACKYFQEMLDVGIRPPAKMFSTLKEALVDAGMEHIAMHFALKIDKLRKSPLIA 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00603 515 Pfam PPR repeat 164 192 IPR002885 -
Pumo3g00603 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Pumo3g00603 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Pumo3g00603 515 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 200 501 - -
Pumo3g00603 515 Pfam PPR repeat family 266 312 IPR002885 -
Pumo3g00603 515 Pfam PPR repeat family 407 456 IPR002885 -
Pumo3g00603 515 Pfam PPR repeat family 200 241 IPR002885 -
Pumo3g00603 515 Pfam PPR repeat family 339 383 IPR002885 -
Pumo3g00603 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 230 IPR002885 -
Pumo3g00603 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Pumo3g00603 515 Gene3D Tetratricopeptide repeat domain 330 513 IPR011990 GO:0005515
Pumo3g00603 515 Gene3D Tetratricopeptide repeat domain 101 258 IPR011990 GO:0005515
Pumo3g00603 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Pumo3g00603 515 MobiDBLite consensus disorder prediction 26 64 - -
Pumo3g00603 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Pumo3g00603 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Pumo3g00603 515 MobiDBLite consensus disorder prediction 26 54 - -
Pumo3g00603 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Pumo3g00603 515 NCBIfam pentatricopeptide repeat 164 195 IPR002885 -
Pumo3g00603 515 NCBIfam pentatricopeptide repeat 234 267 IPR002885 -
Pumo3g00603 515 NCBIfam pentatricopeptide repeat 339 371 IPR002885 -
Pumo3g00603 515 NCBIfam pentatricopeptide repeat 374 407 IPR002885 -
Pumo3g00603 515 NCBIfam pentatricopeptide repeat 446 477 IPR002885 -
Pumo3g00603 515 NCBIfam pentatricopeptide repeat 268 301 IPR002885 -
Pumo3g00603 515 NCBIfam pentatricopeptide repeat 200 231 IPR002885 -
Pumo3g00603 515 NCBIfam pentatricopeptide repeat 411 442 IPR002885 -
Pumo3g00603 515 NCBIfam pentatricopeptide repeat 304 335 IPR002885 -
Pumo3g00603 515 Gene3D Tetratricopeptide repeat domain 259 329 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00603 49 493 Glycosyltransferase AT1G05670 24.056 1.73e-35 139
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00603 3 9109817 9111364 Pumo3g00603 3 9109817 9111364 ECH