Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00584 ATGGCCGCGTCGCCGTCATCCTCCACCGCGGCAAACATCATGCTGGCGATCTTCGAGAAGAAGACGAACAGCGTAGATCTGTACCGCCCCCTCCGCAACTACGTGACCTTCCACTACTCGGAGCGCGAGGCGCAGAACATCGAAGACGATCTCCAAACCCTGAAGCAACTCCGCTCCGACGTCGAGCGCCACTCCGATCCGTCCCTCCCCGCGCGCCGCGACCTCCTCCAAACCTACTTCAAATCCCTCTGCCTCGTCGAGACGCGCTTCCCTATCTCCCCCGACCCCGACCACGTCAACGCCCTCACCTTCGTCTGGTTCGACGCCTTCAAGCCCAAGCAGAAGGCCTCGCAGCAGAACATCCACCTCGAGAAGGCCTCCGTCCTCTTCAATTTGGGCGCCGTTTTCAGCCAGATTGGTTTGTCGTATGATCGGAACACCGTCGACGGCCGCCGCCAGGCCTCGCATGCCTTCATTGCCGCCGCTGGCTCCTTCGCCTTCCTCCGCGACAACGCCTCCATGAAGGCTTCCGTCGGGAGTTCCACCACCGTTGATTTGTCCGTGGAGTGCGCCGGGATGCTGGAGAAGCTCATGCTCGCGCAGGCGCAGGAGTGCGTCTTCGAGAACACCATTGCCAAAGGGAGCACTCCCGGTGTCTGTGCCAAGATCTCTAGGCAGGTTGGGATATATTACGAGGAAGCTTTAGCTGCGCTGAATGTTGCACCCTTGAGCCAGCATTTCGATAAGTCCTGGGTAGTTCATGTGCAGTTAAAGGCGGCACTGTTCTATGCAGAAGCTTGTTATAGGTATGGATTGGAGCTGCATGATAAAGAGGAGATAGCAGAGGAGATTGCACGACTGCGGAGTGCTGTTAATGTGCTGACTGAGGCAAAGAAGAGCTCTAAGGGTGCTGCGGCGCAAATTCTAGATGCAATTGGCAAGTTAGAGGCCAATATTAACCGGAACCTCGAAAGGGCTCTCAAGGAGAATGATAGGGTTTACCTCATGAGAGTTCCTTCACCGAGTTCATTACCACCTCTTCCGGCATTTTCTATGGTGAAGCCCATGGCAATGAATGAGGTGCTGGATGCAAGCAAAGAGAAGATGTTTGTAAGTCTTGTTCCCGACAGCAGTGCAAAGGCCCTCTCCCGGTATACTGAAATGGTAGATGATGTTATAAGAACACAGGCAGAAAAGTTGCAGCAAGCTAGCGAGCTAACCCGAGTCAGGCTTAAGGAAATGGAGCTGCCAGATTCCATTCTTGCTTTGGAAGGAAATTTTACTCTACCAACAAGTCTCAAAGAAGACGTGGAGGCTGTGCAGATCAGTGGGGGCCCTGCTGGTTTGGAAGCAGAGTTGCAGCAACTTAAGGACCTAAGGAGGGTGAATCAAGAGTTGCTGGTCCAGACTGAGGAATTGTTGCAGAAGGAAGCAAGGGAAGATTCTCAATTTAGAAGCCAATTTGGCACAAAATGGACCAGGCCTCAATCAAGCACATTGACCAAGAACTTGCAGGATAGGCTAAATAGGTTTGCAGGTAACTTGAAGCAAGCTGCTGAAAGTGATGGTAGGATCGAGCGTTCGGTTAGAGAACATGCAGCACTCATGTCAATTCTTGATGCCCGTCCGATTGAATCTGCACTTCCAAGCTTGGCAAGGCCGATTATGTCTTTTGATCAAAATGAAGATGCTATTGTGGGGTCTCTCAAGCAAAGCTTGAGGCAACTAGAAACTCTAGGAGCTCAAAGGGCTGGTCTTGAAGATATGCTTAAAGAGATGAAAAGAAAGGATGATATATTACCAAAGTTGATGACATCCACCGGTTCTTATGATGATCTCTTCAAGAAGGAGATAGCAAAATATGACCATATTTGTGATGAAATAGCTCAAAATATTGAGGCACAAGAGCAATTGTTGCTGCAGATCCAGGCTCAAAATGATGAGTTCTCTGTTATCTTCAATCTAGAAGATTACAAAGCTTCACGTGAAAAAGCCTACAAGCAGATTGAAGCTGCCATTGCAAAATTTAGAGAAATAAAGGACAACATCAATGAAGGGTTAAAATTCTATGTTACTCTGCAGGATGCAATCACAAATGTAAAGCAGCAGAGCAACGACTTTGTAATGACGCGGAACATCCAGTGCAGGGAAATGATTGAAGATGTTCAGAGGCAAGTGGCTGGTCTGAGTTTCCAGGATAACAAAAACACAGGTGGTTTTAACAGCAACTACCCTTCAGTGGGAAGCCAAAATCAAAGATCCACTACACAAACAGATCCTCCTCGTCCCCAAACACCTTATTATCAGCATCAGCAGCCAGTTGAGCAGCCACCAGTTCCTCCCTATGGCCATCACCCCCCTCCCCCATATGGTGGTCCTGCACATCATCAGCCTCCACCTCCATACCACATTCCACCATCATCAACTGCTCCATACCCACCCCCTCAGGTACATCAGCAGCCACCGGCAAACCATGAGTATGGCCAACCAGCATATCCCGGATGGCGTGGTCCGTACTACAATGCACAAGCACAGCAACCTGGTTCTGTTCCTCGGCCTCCTTATACCATTCCATCTCCATATCCTCCGCCTCACCAAAGTGGCTACTATAAGCAGCAATAG 2622 0.5004 MAASPSSSTAANIMLAIFEKKTNSVDLYRPLRNYVTFHYSEREAQNIEDDLQTLKQLRSDVERHSDPSLPARRDLLQTYFKSLCLVETRFPISPDPDHVNALTFVWFDAFKPKQKASQQNIHLEKASVLFNLGAVFSQIGLSYDRNTVDGRRQASHAFIAAAGSFAFLRDNASMKASVGSSTTVDLSVECAGMLEKLMLAQAQECVFENTIAKGSTPGVCAKISRQVGIYYEEALAALNVAPLSQHFDKSWVVHVQLKAALFYAEACYRYGLELHDKEEIAEEIARLRSAVNVLTEAKKSSKGAAAQILDAIGKLEANINRNLERALKENDRVYLMRVPSPSSLPPLPAFSMVKPMAMNEVLDASKEKMFVSLVPDSSAKALSRYTEMVDDVIRTQAEKLQQASELTRVRLKEMELPDSILALEGNFTLPTSLKEDVEAVQISGGPAGLEAELQQLKDLRRVNQELLVQTEELLQKEAREDSQFRSQFGTKWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDGRIERSVREHAALMSILDARPIESALPSLARPIMSFDQNEDAIVGSLKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSTGSYDDLFKKEIAKYDHICDEIAQNIEAQEQLLLQIQAQNDEFSVIFNLEDYKASREKAYKQIEAAIAKFREIKDNINEGLKFYVTLQDAITNVKQQSNDFVMTRNIQCREMIEDVQRQVAGLSFQDNKNTGGFNSNYPSVGSQNQRSTTQTDPPRPQTPYYQHQQPVEQPPVPPYGHHPPPPYGGPAHHQPPPPYHIPPSSTAPYPPPQVHQQPPANHEYGQPAYPGWRGPYYNAQAQQPGSVPRPPYTIPSPYPPPHQSGYYKQQ 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00584 873 ProSiteProfiles BRO1 domain profile. 12 407 IPR004328 -
Pumo3g00584 873 Coils Coil 655 682 - -
Pumo3g00584 873 MobiDBLite consensus disorder prediction 732 772 - -
Pumo3g00584 873 MobiDBLite consensus disorder prediction 732 873 - -
Pumo3g00584 873 Coils Coil 576 596 - -
Pumo3g00584 873 Coils Coil 625 645 - -
Pumo3g00584 873 Gene3D alix/aip1 like domains 421 702 - -
Pumo3g00584 873 Gene3D alix/aip1 in complex with the ypdl late domain 375 653 - -
Pumo3g00584 873 Coils Coil 449 476 - -
Pumo3g00584 873 Coils Coil 44 64 - -
Pumo3g00584 873 MobiDBLite consensus disorder prediction 773 820 - -
Pumo3g00584 873 SMART BRO1_2 13 397 IPR004328 -
Pumo3g00584 873 Pfam ALIX V-shaped domain binding to HIV 429 713 IPR025304 GO:0005515
Pumo3g00584 873 Gene3D alix/aip1 like domains 9 374 IPR038499 -
Pumo3g00584 873 CDD V_Alix_like_1 375 711 - -
Pumo3g00584 873 CDD BRO1_Alix_like_1 14 369 - -
Pumo3g00584 873 Pfam BRO1-like domain 14 392 IPR004328 -
Pumo3g00584 873 Coils Coil 277 297 - -
Pumo3g00584 873 MobiDBLite consensus disorder prediction 851 865 - -
Pumo3g00584 873 PANTHER PCD6 INTERACTING PROTEIN-RELATED 12 870 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00584 3 8920641 8928937 Pumo3g00584 3 8920641 8928937 ECH