Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00572 ATGGTTGCCACTTTCTCATTTCCAGCCTCTACCTACCTTGTAAGGTGTTGTTCCATGAGAGAAAACCACCAGGTTAAGCAGCAAGTGAACAGCAGCATCAGAACCAATGGGAGTTTTAGGTCCCCAGTTAAAGTTGAGTCACTAAGCCAAACGGTTTCAACTACCACCACCACTCTTGGTCAAGCTGTTACAATTGGTGAAAATGGTGTACGCCAAAACATCCCAACAAAGAAGCAATTGGTTGATCCTCATCGTCAAGGGCTCATCATTGAAGGTGGAGTTGGTTATAGACAGACTGTTGTCATTAGGTCCTACGAAGTTGGAGCTGATAAAACTGCCACACTTGAGAGCATCCTCAATCTTCTTCAGGAAACAGCATTAAACCATGTTTGGATGTCTGGACTGCTCAGTGATGGGTTTGGGGCAACACATGGAATGGTGAGGAACGATCTCATTTGGGTTGTCTCAAGAATGCAAGTTCTGATTGATTACTATCCCATCTGGGGAGAGGTAGTTGAAATTGACACATGGGTTGGAGCATCAGGCAAGAATGGAATGCGGCGGGACTGGCTGATAAGAAGCCAAGCCACAGGCCACATTTTTGCACGTGCAACAAGCACGTGGGTGATGATGAACCGTAAAACAAGACGTCTCTCCAAAATGCCAGAAGAGGTCAGAGCAGAAGTTTCACCTTGGTTTATAGAGAAGCAAGCAATAAAGGAAGATGTTCATGAAAAAATAGTCAAATTGGACAAGGAGGCAAAATACATGAATTCTGACTTGAAGCCCAAGAGAAGTGATTTGGACATGAACCAACATGTTAATAATGTGAAGTATGTAAGATGGATGCTAGAGACCATCCCAGACCAAATTCTAGAGGGGCACCAATTATCTGGTATCACACTAGAGTACAGAAGGGAATGTGGAAGCTCAGATATAGTTCAATCACTATGTGAACCTGAAGAGGATGAAATACTTCATGGTGTGGTGGAACCAGATTACTGCACAAATCTTCTCAATGGGTTGTCATTGGCATCATCAGATATTATAAATGGTAGTGGAGTACTGACTTCCCTTGAGCAGAGACCATTAAGGTATACACACCTTCTACAAATCAAAGGAGAGAAACAAAACGACGAAATTGTCAGAGGAAGGACTACATGGAAGAGGAAGATTTGTACAATGCCATTTTCCACTTAG 1200 0.4308 MVATFSFPASTYLVRCCSMRENHQVKQQVNSSIRTNGSFRSPVKVESLSQTVSTTTTTLGQAVTIGENGVRQNIPTKKQLVDPHRQGLIIEGGVGYRQTVVIRSYEVGADKTATLESILNLLQETALNHVWMSGLLSDGFGATHGMVRNDLIWVVSRMQVLIDYYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATSTWVMMNRKTRRLSKMPEEVRAEVSPWFIEKQAIKEDVHEKIVKLDKEAKYMNSDLKPKRSDLDMNQHVNNVKYVRWMLETIPDQILEGHQLSGITLEYRRECGSSDIVQSLCEPEEDEILHGVVEPDYCTNLLNGLSLASSDIINGSGVLTSLEQRPLRYTHLLQIKGEKQNDEIVRGRTTWKRKICTMPFST 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00572 399 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 256 396 IPR029069 -
Pumo3g00572 399 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 95 242 IPR029069 -
Pumo3g00572 399 CDD 4HBT 96 212 - -
Pumo3g00572 399 Gene3D Hotdog Thioesterase 89 394 - -
Pumo3g00572 399 FunFam Acyl-[acyl-carrier-protein] hydrolase 87 394 - -
Pumo3g00572 399 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 23 392 IPR045023 GO:0006633|GO:0016297
Pumo3g00572 399 Pfam Acyl-ACP thioesterase 95 389 IPR002864 GO:0006633|GO:0016790
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00572 Pumo-Chr3 8772856 8775330 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00572 80 399 Acyl Lipid Metabolism Gene Families AT1G08510 47.664 2.48e-98 297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00572 3 8772856 8775330 Pumo3g00572 3 8772856 8775330 ECH