Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00569 ATGCTCTCCGTTTCGAGCATCCCCAAAACCCCAATACCCTCCATCCCCCTTCCCATGAAGGACCGCTGCACGCTGTCCTCCTATGGCTCCGTTTACATTCCTCCGCACCACCGCCTACGCTCCCTCGCCAATTTCAACAACTCTCCCTCTCCGGTTTGCGCCAAACTCCGCGAAAACCCCACACCCGCCGTTACTACTCTGCAACCACCGTTAACGGAACAAGTTCCTGATAAGCCGCGTTCGCGCTTCGTTTCTGCTTATGACGACACCGTTTCGGAAGAAGGTTCCGATCGTGAATTTGAACCTCCCTCACTAACGAATGCTTCCCTTAATGATAACACTGATGAGTGGAAGCGGAAATTTACTATGCTCTTAAATGACAAGAGTGAGCAAGAGTTGATATCGAGGGAGAAAAAGGATAGGCGTGATTTTGACCGAATAGCAGTTCTAGCAAGCAGAATGGGGTTGTATAGCCATATGTATGCTAAGGTTGTTGTCTTCAGTAAGGTCCCACTTCCAAATTACAGATATGATTTGGACGATCGGCGGCCTCGGAGGGAGGTGAACTTGTCTATCACCAAGTATACCCAAGTTAATGCATATTTTGAGGAATATCTTAGCCAAAAATCCAGGATGAACAAAAGCTTTTCGGATTTGTCATCTGCAAGATCAAGCAGCAATGGCAGTATTGGTATGGATGAAGGGCTTTTTGAGCAACCTGAGCCACTAGCATCCAGCAAGGCTGTTATGGAAAAAATTCTACAGCAGAGGAGCTTACAAATGTGCGATCAGCAGCAAGCTTGGCAGGAATCTCCTGAAGGAAGAAAAATGCTAGAATTTCGCAGAAGTCTCCCTGCTTATAAAAAGAAAGAAGCAATATTATCACTCATATCAAGGAATCAGGTAGTTATCATTTCGGGCGAAACAGGTTGTGGCAAGACAACACAAATTCCACAATTTATTTTAGAATCTGAGATAGAATCAGTTCGTGGAGCTGCTTGTAATATTATATGCACACAGCCAAGACGCATTTCAGCCATGTCTGTTTCTGAAAGGGTGGCCTCTGAGAGAGGGGAGAAATTGGGCGAATCTGTTGGATATAAAGTTCGACTTGAGGGTATGAAAGGGAGAGATACCCATCTTCTCTTTTGCACCACAGGCATTTTATTAAGAAGATTACTAGCTGATGGAAAGTTAAAAGGTGTAACTCATGTTATTGTGGATGAAATTCATGAGCGTGGGATGAATGAAGATTTTCTACTTATTATCCTTAAAGAACTCCTTCCACATCGACCAGAACTAAAACTGATTTTGATGAGTGCTACCCTTGATGCCGAGCTCTTTTCTTCGTACTTTAATGGGGCTCCGACTATGTTTATTCCGGGCTTCACATACCCCGTTAGAACTCACTTTTTGGAGAACATTCTTGAAATGACGGGCTACAGATTAACTCCTTATAATCAAATTGATGATTATGGCCAAGAAAGGATGTGGAAAATGAACAAACAGGCCCCAAGAAAGAGAAAAAGCCAAATTGCTTCCGCTGTAGAGGATGCAATTAGAGCAGTTGATTTCAAAGATTACAGCCCACAGACGCAGGAGTCTTTGTCATGTTGGAATCCTGACTGTATTGGTTTTAGTCTCATAGAATATATTTTATGCTATATATGTGAGAATGAAAGGCCTGGCGCGGTTTTGGTTTTCATGACTGGATGGGATGATATAAGCTCTCTGAAAGAGAAGCTCCTGACACATACTGTCTTGGGAGATCCAAATCGTGTTTTGTTGCTTACATGTCATGGCTCAATGGCTAGTTCAGAGCAGAGATTAATATTTGAAGAGCCTGAAGATGGAGTAAGAAAAATAGTGCTAACAACAAATATTGCTGAAACGAGTATCACAATAAATGATGTTGTTTTTGTTCTTGACTGCGGAAAGGCAAAAGAAACGTCATATGATGCACTGAATAACACGCCTTGTTTGCTTCCTACATGGATCTCTAAGGTTTCTGCTCAACAAAGAAGAGGAAGAGCTGGTCGGGTTCAACCAGGAGAGTGTTACCATCTCTATCCTAGATGTGTGTATGATTCTTTTGCAGAGTATCAGTTGCCAGAAATTTTGAGAACACCTTTGCAATCTCTCTGTTTACAAATCAAAAGTCTAAGACTTGGAAGTATATCTGAGTTCTTGTCTAGGGCTTTGCAGTCTCCTGAGATACTTGCGGTACAAAATGCAATTGAATATCTAAAAATAATCGGGGCTTTGGATGAGGATGAGAATCTCACTATTCTAGGGCGCTCTTTGACAATGCTTCCTATGGAACCCAAACTTGGCAAGATGCTAATATTAGGTGCTATTTTCAATTGCCTGGATCCCATATTAACTGTTGTTGCTGGGCTTAGTGTTAGAGATCCTTTTCTAACACCATTGGATAAAAAAGATCTTGCAGAGGCAGCAAAATCTCAATTCTGTGGTGCATACAGTGACCACCTTGCGCTTGTAAGGGCATATGAAGGTTGGAAAGATGCTGAACTGGACCTGGGTGGATATGAATACTGCTGGAAAAATTTTCTTTCCTCACAATCCATGAAAGCTATTGATGCTCTTCGTAGGGAGTTCATATGCCTGCTGAAGGATATCGGATTAGTTGATAGCAACACAGGCAGCTGCAATGCATGGAGCTCTGATGTAAATCTTATCCGAGCAGTTATTTGCTATGGTCTATATCCTGGAATTTGTTCTGTTGTGCATAATGAGAAGTCATTCTCTTTGAAAACAATGGAGGATGGTCAAGTGCTCCTATATTCGAACTCGGTGAATGCTCGGGAAACTAAAATTTCATATCCATGGCTAGTTTTTAATGAGAAGATAAAAGTGAACTCAGTTTTTCTCCGTGACTCAACAGCTGTGTCTGATTCAGTGGTGCTTCTGTTTGGTGGAAGCTTATCGAAAGGAGATGCTGATAATCACTTAAAAATGTTGGGAGGATATCTAGAGTTTTTCATGGAGCCTACTGTTGCTGAAATGTACCAGAGTATAAGGAGAGAACTTGATGACTTCATTCAGAGCAAGCTACTTTTTCCAAGAATGTGCATACAGTGGTATCATGATCTCCTATCTGCAGTACGGCTGTTGATTTCGAATGACAAATGTGAAGGTAAATTTGTATTTGGTCGCCAGGACCTTAAACCATCAAAGAAATCTACTATGGTGGCCTCACATCTGACCTTGGCTTCAAGGACTGAGAGTGGACCTGGGGGTGATAATTCTAAAAGTCAACTCCAAACCTTGCTTACGAGAGCAGGATATGCAGCACCCCTCTACATGACTAAACAATTGAAGAACAATCAGTTTCAGGCTACAGTCGAATTCAATGGAATGCAGATAATGGGTCAACCTTGTAACAATAAGAAGAGTGCAGAAAAAGATGCTGCAGCTGAGGCACTGCAATGGCTGATGGGTGGAAAGCAAACAGGCAGGGAGTATATCAATCACGTGTCTATGTTACTTAAGAAAAGTAAGAAGGATCACAATTAA 3537 0.4204 MLSVSSIPKTPIPSIPLPMKDRCTLSSYGSVYIPPHHRLRSLANFNNSPSPVCAKLRENPTPAVTTLQPPLTEQVPDKPRSRFVSAYDDTVSEEGSDREFEPPSLTNASLNDNTDEWKRKFTMLLNDKSEQELISREKKDRRDFDRIAVLASRMGLYSHMYAKVVVFSKVPLPNYRYDLDDRRPRREVNLSITKYTQVNAYFEEYLSQKSRMNKSFSDLSSARSSSNGSIGMDEGLFEQPEPLASSKAVMEKILQQRSLQMCDQQQAWQESPEGRKMLEFRRSLPAYKKKEAILSLISRNQVVIISGETGCGKTTQIPQFILESEIESVRGAACNIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRRLLADGKLKGVTHVIVDEIHERGMNEDFLLIILKELLPHRPELKLILMSATLDAELFSSYFNGAPTMFIPGFTYPVRTHFLENILEMTGYRLTPYNQIDDYGQERMWKMNKQAPRKRKSQIASAVEDAIRAVDFKDYSPQTQESLSCWNPDCIGFSLIEYILCYICENERPGAVLVFMTGWDDISSLKEKLLTHTVLGDPNRVLLLTCHGSMASSEQRLIFEEPEDGVRKIVLTTNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPTWISKVSAQQRRGRAGRVQPGECYHLYPRCVYDSFAEYQLPEILRTPLQSLCLQIKSLRLGSISEFLSRALQSPEILAVQNAIEYLKIIGALDEDENLTILGRSLTMLPMEPKLGKMLILGAIFNCLDPILTVVAGLSVRDPFLTPLDKKDLAEAAKSQFCGAYSDHLALVRAYEGWKDAELDLGGYEYCWKNFLSSQSMKAIDALRREFICLLKDIGLVDSNTGSCNAWSSDVNLIRAVICYGLYPGICSVVHNEKSFSLKTMEDGQVLLYSNSVNARETKISYPWLVFNEKIKVNSVFLRDSTAVSDSVVLLFGGSLSKGDADNHLKMLGGYLEFFMEPTVAEMYQSIRRELDDFIQSKLLFPRMCIQWYHDLLSAVRLLISNDKCEGKFVFGRQDLKPSKKSTMVASHLTLASRTESGPGGDNSKSQLQTLLTRAGYAAPLYMTKQLKNNQFQATVEFNGMQIMGQPCNNKKSAEKDAAAEALQWLMGGKQTGREYINHVSMLLKKSKKDHN 1178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00569 1178 Gene3D - 547 701 IPR027417 -
Pumo3g00569 1178 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 548 722 IPR001650 -
Pumo3g00569 1178 SMART ultradead3 281 475 IPR014001 -
Pumo3g00569 1178 Gene3D - 1065 1157 - -
Pumo3g00569 1178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 291 860 IPR027417 -
Pumo3g00569 1178 SUPERFAMILY dsRNA-binding domain-like 1084 1152 - -
Pumo3g00569 1178 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1089 1154 IPR014720 -
Pumo3g00569 1178 Pfam Helicase associated domain (HA2) 745 818 IPR007502 GO:0004386
Pumo3g00569 1178 CDD DEXHc_RHA-like 300 460 - -
Pumo3g00569 1178 SMART DRBM_3 1090 1153 IPR014720 -
Pumo3g00569 1178 Pfam Double-stranded RNA binding motif 1090 1152 IPR014720 -
Pumo3g00569 1178 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 294 461 IPR014001 -
Pumo3g00569 1178 FunFam Putative ATP-dependent RNA helicase DHX36 724 828 - -
Pumo3g00569 1178 Gene3D - 240 462 IPR027417 -
Pumo3g00569 1178 FunFam DExH-box ATP-dependent RNA helicase DExH3 1068 1157 - -
Pumo3g00569 1178 Pfam DEAD/DEAH box helicase 292 444 IPR011545 GO:0003676|GO:0005524
Pumo3g00569 1178 FunFam DExH-box ATP-dependent RNA helicase DExH3 238 462 - -
Pumo3g00569 1178 Pfam Helicase conserved C-terminal domain 549 681 IPR001650 -
Pumo3g00569 1178 PANTHER ATP-DEPENDENT RNA HELICASE 234 1004 - -
Pumo3g00569 1178 CDD SF2_C_RHA 528 690 - -
Pumo3g00569 1178 SMART ha2_5 744 834 IPR007502 GO:0004386
Pumo3g00569 1178 FunFam DExH-box ATP-dependent RNA helicase DExH3 544 700 - -
Pumo3g00569 1178 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 900 981 IPR011709 -
Pumo3g00569 1178 Gene3D - 724 826 - -
Pumo3g00569 1178 SMART helicmild6 573 682 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00569 Pumo-Chr3 8720007 8730762 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00569 3 8720007 8730762 Pumo3g00569 3 8720007 8730762 ECH