Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00562 ATGGAGAAGGTTTGTGAATTCTGCACAGCTTTGAGGCCACTTGTTTACTGTAAGGCTGATGCAGCATATCTGTGTCTATCCTGTGATGCAAAGGTGCATTTGGCAAATGCATTGTCCGGCCGGCACCTCCGGAACCTTGTGTGTAACTCATGCGGATACCATCTTGCTTATGTTATGTGTTTGAACCACAAAATGTTAATCTGTAGAGAGTGCGATCAAAAGTTGCACAATGTTTCTTTACCACATCAGAAACGAGCTATGAGAAGTTTCATGGGTTGCCCTTCTGCTAAAGACTTTGCAGCACTCTGGGGGTTTGAATTGAATGAGATTGAAAACAGTGCCAGTCAAGATCAGTTTGATTCTTCAGTTTCTTGTGTTTCTGCAGATTTGAATGTTGCCCAAGTTTCAGGAAAGCTTGGCATTCAAACTGGGGTCCCTCCAATGCCATCTGGGGCCAAACTTGATGGGGGATCAACCAGTCAACAAGGTCAGATATTGTACAGTAATCAAGAGCGTCAAGCTATTCTGCAGCAGATTATTGATTTAAAATGGCTTCAACTAAATGAGGAGATTGATTATTCTGCAAAGATCAACAGGCTACAAGAAAAAGATTTAACTCCTTCAGTATATCATACTCTTAAGAAATTGGACGAAAAATTCAATGAGCAAGCACAAAATTCCCAGGATCTTGCTACTAATGTTCTGGAAAAAGACTGTTCCATTGTGGAGCTGAATCCTGAAACTTTGCCTTCTACGTTTTCTCAACTTGATAATTTATCTTCTTCAATTATCGATCTTCCCTTGCATGGAGAGTTGTTCTGGACATGCAGAAGTCCACTTCGAAGTAATCAGTTGTGGTCCCAAAATATTCAAGACCTTGGGATATGTGAAGAACTTGTTTGTCAAGATGATTTTAACATCCCTGATGTTGACTTAACTTTCCAAAACTTTGAGGAACTATTTGGAGGAGATCAAGACCCAATTAGAATACTGCTTGATGATCAGGATGTCTCCTGCTCTTCTTTAGAGAAGGATAAGTCAGTTGACAAGTCAGATCTTGACAATCCAAGTGCAATGGAGGATTCTTCAGCAGCTGCATCAATTAGTATCTCCCAATCTGATCATGAAAACAAGGAAATGAATCCTCTCAGCCAGTACTGTCCAAGAAGCATGGATCCTGCACATGCAATTCGATCATTTGATTCAACTATACCATTCTCTGTTTTGAGATTCAATTCGGAAAGCAGTTGCACTAGCCATGAACATGATGACAGTGCCCTATCTCCCTACAGTGAAGGGAAGGCTTATTCAGCACCGAGAAAAATGCATAATAAGGAAGCTTGCTCTCCCTCCTCCAACGGCGGATTCGGCGGCGGCGCCTCCGCCGGTCAAATGCCGTCAACCGGCGGTGTCTACAGTTCGCTGTACTCGGCTCTGTCCAACGAGAACCTTCCCTCGCTCTCCGCGAACTGCAGCAACGGCAGCGGCGGCGTTTCGCTCTATCCTTACTCCGAGTCAGCAACTCACTACGACTCGTGCGTGATTCAGAAGCACCAGGATATGGTGAACCGCCAAAGCATGTGTCTGAATCGCCTCGTTGAAACTTCCAAGGAGGTGGAGGTTCTGAGGCAGGAGAACGGCCAGCTCCGAGCCGCGAACAAGGAGCTCCAGAAGCAGCTGCACCTCGTCATCCAGGCTTCGCTGGAGAATCACTTCGGCGGCTCCTCCGGCCAGACGCAACAACCGACGCTGTTCGATGTCTTGCATGGCTTCCGCGGCCTCCACATTGGGGAAGGGAAAGAGAATTATGCCGATTGGAATAACAACAACAGCAATAATCATAATCATAACAATATTATGAATAATAATAACAATAAGGAGCTGCAGGAAATTTCGGACGAGAGTCCAACGAGCGTGATTGAGGATAATAACGTGGTGGAAGTGGAGAGGTTCTCGCTCCCTAAGAGCATATCTGTGAGGTCCAATGGCTACTTGAAGATGGCTCAGTCTGCTGCTGCTCTTACCACCAACAATAATGCCACTCGCAACAAAGGTGCCACTCGCCCACGCGCCTCCGCCACTCCACCTGAAGCAGTTCAAAAGGTATATGTGCGTGGAGGGCAGAAAGAGGAAGAGCCTCTTGAAATGGTAGTGTATAACCAAGGGATGTTCAAGACGGAGCTGTGTAATAAGTGGCAGGAAACTGGAACATGCCCATATGGAGACCACTGCCAATTTGCTCACGGTATTGGGGAGCTTCGCCCAGTGATCCGCCACCCACGCTACAAAACTGAGGTCTGCAGAATGGTCCTTGCTGGGGTCGTGTGCCCATATGGCCATCGATGCCATTTCCGCCATGCACTTACTGAACAAGAGAAGGCTGTCGTATCACAGCCTAAGCCCAGAACAATGAAGCTGGAAAGATAA 2427 0.4635 MEKVCEFCTALRPLVYCKADAAYLCLSCDAKVHLANALSGRHLRNLVCNSCGYHLAYVMCLNHKMLICRECDQKLHNVSLPHQKRAMRSFMGCPSAKDFAALWGFELNEIENSASQDQFDSSVSCVSADLNVAQVSGKLGIQTGVPPMPSGAKLDGGSTSQQGQILYSNQERQAILQQIIDLKWLQLNEEIDYSAKINRLQEKDLTPSVYHTLKKLDEKFNEQAQNSQDLATNVLEKDCSIVELNPETLPSTFSQLDNLSSSIIDLPLHGELFWTCRSPLRSNQLWSQNIQDLGICEELVCQDDFNIPDVDLTFQNFEELFGGDQDPIRILLDDQDVSCSSLEKDKSVDKSDLDNPSAMEDSSAAASISISQSDHENKEMNPLSQYCPRSMDPAHAIRSFDSTIPFSVLRFNSESSCTSHEHDDSALSPYSEGKAYSAPRKMHNKEACSPSSNGGFGGGASAGQMPSTGGVYSSLYSALSNENLPSLSANCSNGSGGVSLYPYSESATHYDSCVIQKHQDMVNRQSMCLNRLVETSKEVEVLRQENGQLRAANKELQKQLHLVIQASLENHFGGSSGQTQQPTLFDVLHGFRGLHIGEGKENYADWNNNNSNNHNHNNIMNNNNNKELQEISDESPTSVIEDNNVVEVERFSLPKSISVRSNGYLKMAQSAAALTTNNNATRNKGATRPRASATPPEAVQKVYVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAVVSQPKPRTMKLER 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00562 808 FunFam zinc finger CCCH domain-containing protein 15-like 717 756 - -
Pumo3g00562 808 PANTHER CCCH ZINC FINGER/TIS11-RELATED 517 795 IPR045877 GO:0003729
Pumo3g00562 808 MobiDBLite consensus disorder prediction 342 380 - -
Pumo3g00562 808 SMART bboxneu5 1 47 IPR000315 GO:0008270
Pumo3g00562 808 SMART bboxneu5 48 87 IPR000315 GO:0008270
Pumo3g00562 808 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 724 749 IPR000571 GO:0046872
Pumo3g00562 808 Gene3D - 718 756 - -
Pumo3g00562 808 Gene3D - 757 793 - -
Pumo3g00562 808 Coils Coil 532 559 - -
Pumo3g00562 808 ProSiteProfiles Zinc finger C3H1-type profile. 761 789 IPR000571 GO:0046872
Pumo3g00562 808 SUPERFAMILY CCCH zinc finger 720 755 IPR036855 GO:0046872
Pumo3g00562 808 MobiDBLite consensus disorder prediction 676 698 - -
Pumo3g00562 808 ProSiteProfiles Zinc finger C3H1-type profile. 723 751 IPR000571 GO:0046872
Pumo3g00562 808 SUPERFAMILY CCCH zinc finger 757 791 IPR036855 GO:0046872
Pumo3g00562 808 CDD Bbox1_BBX-like 4 44 - -
Pumo3g00562 808 ProSiteProfiles Zinc finger B-box type profile. 43 87 IPR000315 GO:0008270
Pumo3g00562 808 MobiDBLite consensus disorder prediction 342 356 - -
Pumo3g00562 808 SMART c3hfinal6 761 788 IPR000571 GO:0046872
Pumo3g00562 808 SMART c3hfinal6 723 750 IPR000571 GO:0046872
Pumo3g00562 808 MobiDBLite consensus disorder prediction 357 380 - -
Pumo3g00562 808 FunFam Zinc finger protein 36, C3H1 type-like 1 757 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00562 Pumo-Chr3 8586562 8596960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00562 503 803 C3H Transcription Factor Family AT1G68200 47.896 1.58e-79 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo3g00562 zf-CCCH 7.7e-12 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00562 3 8586562 8596960 Pumo3g00562 3 8586562 8596960 ECH