Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00557 ATGGAGGCGCAACCGCCAACCCCCTCGACTGCGCCGCCGCCTCCGCCGCCGCACCTCAACTACCCCGACTCCGTGGAATCCTCGCCGCGCTCCCGCAACACCGACTCCTGGGACGAGCCATTCGCGCCGGCGTCGACGAAGCTCCGTCTGATGTGCAGCTACGGCGGCCACATCGTCCCGCGCCCCCACGACAAGTCCCTCTGCTACGTCGGCGGCGACACGCGCATCATCGTGGCCGAACGCGCCACCTCACTCGCGGACCTCTCCACGCGCCTCTCGAAGACGTTCCTGAATGGAAGACCCTTCACGCTCAAGTACCAGCTCCCCAACGAGGACCTCGATTCCCTCATCTCCGTCACCACCGACGAAGACCTCGAGAACATGATCGACGAGTACGACCGCACCGCCGCCGCCGCCACCTCCGCCGTCAAACCCTCCCGCATCCGCCTCTTCCTCTTCCCCACCAAACCCGATTCCACTCACTCCATCCCTCCGCAGATTCTTGACACGTCAGCGAAATCGGACGATTGGTTCTTGAATGCCCTAAACGGCGCCGGATTGCTTAACCGCGGGTTTTCTGATTCTGCTTCCGTTAATTGCCTTCTTGGACTCGATGACGAGATTGCCGGGAACAACCTCGAACCCGGTTCCAAGGACGGTGGGGAAGGTGGTGGTATTGGTATTGGTATTGGTATTGGTGTTGGTGGTGGTGCTTCGCAGGGTGGATCTTTCGGTAACGGCAAGAATTTGAAGCAGGATGTTCACTCCGTTCCCGATTCGCCCATGCTCGAAACGACGTCGTCTTTTGGGTCCACTTCGTCGTCGCCGTCGCTCGCCAACTTGCCGCCGATTAGGGTTCACGTGGTGGAGGATCAGAAGGTGTTGGGGATTGAGGAGCAGTTCGCGCAGATGGGGGTTGGTGTGGGGCAGAAGCAGCAAGATGAGGGTTTTGTTTTGCTGTCTTCCCCGCCTCCGCCGCCGGTTCCGGCGACCCTCGCCGCCGTGGGTGCCCCGATTGGGCCGGCCACGGTGGTTGCTGGGGAGTATCATAACCGGGTTGTCTCCGATGATGAGAGATCCGATCACGGGGTTCCTGTTGGGTATAGAAAACCACCCACTCCTCAACCACAGGTTCAGTCACAACAAACACAAGTACAGTCACAGACACAAACACAAACACTTGCTCCTCAATTTCAACAGAAGTCAACTGGTGGTAGCGCCGTTGTTGATTTGCCTTCTCCCGATTCAGTTTCAAGTGATAGTAGTCTTGCGAATGCAATCTCGCGTTCGAAACCTGCTGTTTATCAAGAACAAGTTCAGATTCAACCTGGGACTACTAGGGTTCCTAGTAACCCTGTGGATCCGAAGCTTAATGTGTCTGATCCGCATGGTCGGATCCAGATGCAGCAACATGTACAGGACCCTGGATATTTGTTGCAACAGCAATTTGAACAGCACCAGCAGCTGCAGTCGCAACCGCAACCGCAACAGCAACAGCAATTTGAACAGCACCAGCACCAGCAGACACTGCAACAACAGCAGCAACAGTTTATACATGGCACACACTTTATTCACCATAACCCTGCTATTCCTGCATATTATCCTGTATATCCTTCCCAGCAACATCCCCAGCATCCACAGGTTTACTATGTGAGACAGGCGCAGGCTTACAACCTGCCTGTGCAGCAGGCTAACATGGGCGAGTCTGCTGGGAACATCGCTTCTAGCCGGTCACAAACTCCACCAAATCCTGCCACATTGGTTCCACAACCTGCTACTTACAACGCCATTAGAAATGCTCCTATGCCTAAAACTGAAATGAATGCTTACAGAGCTGCAACTGCAGGCACCCCTCAACTAGTTCAAGTTCCTACAAGCCAACATCAGCAACAGTATGTCACTTACTCACAGATTCACCATCCATCTCAGTCCATGGCTCCCAATTCTGCTGCCCCTGCCAATTATGCTTTTGATTATGCCGATCCTGCCCATGCTCAAATATACTACTCTCAACCTTTGCCACCCACAATGCCTTCACAGTACCAGACTATGACTGCTGCTGCTGTGATGATGCAGGAAGGTTCAGCTCAGCATCCCTCAGACAGCGTGAAGCAGCAGATAAGAACCTCACAGCCATTATAA 2142 0.5467 MEAQPPTPSTAPPPPPPHLNYPDSVESSPRSRNTDSWDEPFAPASTKLRLMCSYGGHIVPRPHDKSLCYVGGDTRIIVAERATSLADLSTRLSKTFLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTAAAATSAVKPSRIRLFLFPTKPDSTHSIPPQILDTSAKSDDWFLNALNGAGLLNRGFSDSASVNCLLGLDDEIAGNNLEPGSKDGGEGGGIGIGIGIGVGGGASQGGSFGNGKNLKQDVHSVPDSPMLETTSSFGSTSSSPSLANLPPIRVHVVEDQKVLGIEEQFAQMGVGVGQKQQDEGFVLLSSPPPPPVPATLAAVGAPIGPATVVAGEYHNRVVSDDERSDHGVPVGYRKPPTPQPQVQSQQTQVQSQTQTQTLAPQFQQKSTGGSAVVDLPSPDSVSSDSSLANAISRSKPAVYQEQVQIQPGTTRVPSNPVDPKLNVSDPHGRIQMQQHVQDPGYLLQQQFEQHQQLQSQPQPQQQQQFEQHQHQQTLQQQQQQFIHGTHFIHHNPAIPAYYPVYPSQQHPQHPQVYYVRQAQAYNLPVQQANMGESAGNIASSRSQTPPNPATLVPQPATYNAIRNAPMPKTEMNAYRAATAGTPQLVQVPTSQHQQQYVTYSQIHHPSQSMAPNSAAPANYAFDYADPAHAQIYYSQPLPPTMPSQYQTMTAAAVMMQEGSAQHPSDSVKQQIRTSQPL 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00557 713 MobiDBLite consensus disorder prediction 243 277 - -
Pumo3g00557 713 SUPERFAMILY CAD & PB1 domains 63 163 - -
Pumo3g00557 713 MobiDBLite consensus disorder prediction 1 22 - -
Pumo3g00557 713 MobiDBLite consensus disorder prediction 691 713 - -
Pumo3g00557 713 PANTHER OS05G0427100 PROTEIN-RELATED 20 513 - -
Pumo3g00557 713 MobiDBLite consensus disorder prediction 571 590 - -
Pumo3g00557 713 CDD PB1_UP2 51 153 - -
Pumo3g00557 713 MobiDBLite consensus disorder prediction 354 462 - -
Pumo3g00557 713 Gene3D - 67 153 - -
Pumo3g00557 713 MobiDBLite consensus disorder prediction 259 277 - -
Pumo3g00557 713 ProSiteProfiles PB1 domain profile. 47 155 IPR000270 GO:0005515
Pumo3g00557 713 SMART PB1_new 62 153 IPR000270 GO:0005515
Pumo3g00557 713 MobiDBLite consensus disorder prediction 373 453 - -
Pumo3g00557 713 Pfam PB1 domain 63 154 IPR000270 GO:0005515
Pumo3g00557 713 MobiDBLite consensus disorder prediction 24 40 - -
Pumo3g00557 713 MobiDBLite consensus disorder prediction 1 40 - -
Pumo3g00557 713 MobiDBLite consensus disorder prediction 483 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00557 Pumo-Chr3 8492793 8496125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00557 44 269 MAP Kinase Kinase Kinase AT1G79570 33.188 1.40e-24 108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00557 3 8492793 8496125 Pumo3g00557 3 8492793 8496125 ECH