Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00556 ATGCGTAGTGTTGGCGGTGAAGTTGAAGTGAAAAGGTTGTTTATTGGAGCGGGATGCAACAGAATAGTAAACAACGTTTCATGGGGTGCTTCTGGTTTACTCTCTTTTGGAGCTCACAACGCCGTTGCTATTTTCTGCCCCAAGAGTGCTCAAATTTTGACTACTCTCCCGGGTCATAAGGCAGTTGTGAATTGCACCCACTGGCTCCCTTCTAGCAAGTTTTTATTTAAAGCAAAACAATTGGAGCAGCACTATTTGCTATCTGGAGATGCAGATGGTAATATTATTTTGTGGGAACTGTCCCTTGCTGATGGGAAGTGGAGGCAAGTGTTACAGCTGCCACAATCACACAAGAAAGGTGTTACATGCATTAGTGGAATTATGGTTTCTCAAACTGAGGCAATGTTTGCATCTACTTCTTCAGATGGCACTGCTTGTGTATGGGAACTTGTATTTCCAATGACTGGTAGAGGTGACTGTAAATTATCGTGCCTGGATTCTTTCTCTGTTGGTTCTAAATCCATGGTAGCCCTATCATTAGCTGAATTGCCTGGAGATAGTGGCCAAATCGTCCTTGCAATGGGAGGATTGGATAACAAGATTCACCTTTATTGTGGTGAAAGGACAGGAAAGCTTGTACATGCATGTGAGCTAAAAGGGCATACAGATTGGATCCGGAGTTTGGACTTCTCATTACCTATAAGCATCAATGGGGAAGTAAACAATATTTTTCTGGTGAGTTCATCTCAGGATAAAGGCATACGAATTTGGAAGATGGCATTACGCAGCTCTATGTCCAATGGACATGGCATATACAAGAAAGGAGAAATAAGCTTATCATCCTATATAGAAGGTCCTGTACTTGTGGCTGGTTCATCTTCTTTTCAGATATCCTTAGAATCTCTTTTAATTGGACACGAGGATTGGGTATATTCAGTAATGTGGCAACCCCCTTTGGTTGCATCCATGGAAGGGGATACCTATTATCAACCACAAAGTATCTTATCTGCATCTATGGACAAGACTATGATGATCTGGCAACCTGAAAAGACTTCTGGTGTCTGGATGAATGTGGTCACTGTTGGGGAACTAAGCCACTGTGCTCTGGGGTTCTATGGTGGCCATTGGAGCCCAAATGGAGATTCAATTTTAGCACATGGATATGGTGGATCTTTCCATCTTTGGAAAAATGTTGGTAATGATAATTGGCAACCACAAAAGGTTCCCTCTGGTCATTTTGCATCAGTGACTGATATTGCATGGGCTAGATCTGGTGATTATATTATGTCTGTCAGTCATGACCAGACAACTAGAATTTATGCTCCATGGAAAGTTGAGGCTTCTCTCCAAGATGGAGAATTTTGGCATGAAATAGCTCGCCCTCAAGTTCATGGACATGATATAAATTGCATGGCAATTATTAATAGTAAGGGGAATCATCGTTTTGTCTGTGGAGCTGAAGAAAAAGTTGCCAGAGTGTTTGAAGCCCCATTATCATTTTTGAATACATTAAATAATGCCACTTTGCAGAAGTCCTGTACTTCCGATGATATCATGGGAGATGTTCAGATTTTGGGTGCAAATATGTCAGCTCTTGGACTATCACAGAAACCTATTTATGTTCAAGCTGTACACAAGGCCCCTGAAAGAAGTGGGATTGATGGTCTCGACACCCTTGAAACTATTCCTGATGCCGTTCCAACTGTGTTCACTGAACCTCCAATTGAAGATCAACTGGCTTGGCATACACTTTGGCCTGAATCTCATAAACTCTATGGTCATGGAAATGAATTATTTTCTTTATGCTGTGATCATAAGGGTGAGCTTGTTGCTTCTTCATGCAAGGCCCAGTCTGCAGCTGTTGCAGAGATATGGCTTTGGCAGGTGGGTTCATGGAAAGCAGTTGGCCGCTTGCAATCCCACAGCTTAACTGTGACACAGATGGAGTTCTCACATGACAACAACTTTCTTTTGACTGTCTCAAGGGATCGCCAGTTCTCTGTTTTTTCAATCACAAGAACAGGCACCAGTGAAATTAGTTATAGTCTTCTTGCGAGGCAGGAGGGGCACAAGCGGATTATTTGGTCATGTTCTTGGAATCCACATGGTCACGAATTCGCAACAGGTTCACGGGATAAGACAGTTAAAATCTGGGCCGTGGAGAGGGAATCCATCAGGCAGCTTATGACTTTACCTCAATTTGTGAGTAGTGTGACAGCATTATCTTGGGTTGGTCTCCATCATCAGAGAAATAATGGACTTCTAGCTGTTGGAATGGAAAATGGCCAAATAGAATTGTGGAATCTGTCTTATAACAGAACAGATGATGGGAGCATAGCAGCACCAGGTCTGGCTGCTGCTCTTGCTGTACGTATAGATCCTTTTATATGTCATGCCTCCACTGTAAACCGTCTAGCATGGAAGAAAAATGAGGATGATCACACGAGTATGCAACTTGCTTCATGTGGAGCTGATAATTGTGTAAGAGTGTTTGATGTAACTGTTGAGTAA 2511 0.4245 MRSVGGEVEVKRLFIGAGCNRIVNNVSWGASGLLSFGAHNAVAIFCPKSAQILTTLPGHKAVVNCTHWLPSSKFLFKAKQLEQHYLLSGDADGNIILWELSLADGKWRQVLQLPQSHKKGVTCISGIMVSQTEAMFASTSSDGTACVWELVFPMTGRGDCKLSCLDSFSVGSKSMVALSLAELPGDSGQIVLAMGGLDNKIHLYCGERTGKLVHACELKGHTDWIRSLDFSLPISINGEVNNIFLVSSSQDKGIRIWKMALRSSMSNGHGIYKKGEISLSSYIEGPVLVAGSSSFQISLESLLIGHEDWVYSVMWQPPLVASMEGDTYYQPQSILSASMDKTMMIWQPEKTSGVWMNVVTVGELSHCALGFYGGHWSPNGDSILAHGYGGSFHLWKNVGNDNWQPQKVPSGHFASVTDIAWARSGDYIMSVSHDQTTRIYAPWKVEASLQDGEFWHEIARPQVHGHDINCMAIINSKGNHRFVCGAEEKVARVFEAPLSFLNTLNNATLQKSCTSDDIMGDVQILGANMSALGLSQKPIYVQAVHKAPERSGIDGLDTLETIPDAVPTVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHKGELVASSCKAQSAAVAEIWLWQVGSWKAVGRLQSHSLTVTQMEFSHDNNFLLTVSRDRQFSVFSITRTGTSEISYSLLARQEGHKRIIWSCSWNPHGHEFATGSRDKTVKIWAVERESIRQLMTLPQFVSSVTALSWVGLHHQRNNGLLAVGMENGQIELWNLSYNRTDDGSIAAPGLAAALAVRIDPFICHASTVNRLAWKKNEDDHTSMQLASCGADNCVRVFDVTVE 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00556 836 SMART WD40_4 49 99 IPR001680 GO:0005515
Pumo3g00556 836 SMART WD40_4 296 347 IPR001680 GO:0005515
Pumo3g00556 836 SMART WD40_4 106 149 IPR001680 GO:0005515
Pumo3g00556 836 SMART WD40_4 402 441 IPR001680 GO:0005515
Pumo3g00556 836 SMART WD40_4 451 495 IPR001680 GO:0005515
Pumo3g00556 836 SMART WD40_4 584 628 IPR001680 GO:0005515
Pumo3g00556 836 SMART WD40_4 209 258 IPR001680 GO:0005515
Pumo3g00556 836 SMART WD40_4 357 396 IPR001680 GO:0005515
Pumo3g00556 836 SMART WD40_4 680 719 IPR001680 GO:0005515
Pumo3g00556 836 SMART WD40_4 724 768 IPR001680 GO:0005515
Pumo3g00556 836 SMART WD40_4 631 670 IPR001680 GO:0005515
Pumo3g00556 836 SMART WD40_4 788 832 IPR001680 GO:0005515
Pumo3g00556 836 Gene3D - 3 170 IPR015943 GO:0005515
Pumo3g00556 836 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 687 721 - -
Pumo3g00556 836 PANTHER ELONGATOR COMPLEX PROTEIN 2 11 835 IPR037289 GO:0002098|GO:0033588
Pumo3g00556 836 Gene3D - 577 677 IPR015943 GO:0005515
Pumo3g00556 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 409 440 IPR001680 GO:0005515
Pumo3g00556 836 Pfam WD domain, G-beta repeat 114 148 IPR001680 GO:0005515
Pumo3g00556 836 Pfam WD domain, G-beta repeat 51 98 IPR001680 GO:0005515
Pumo3g00556 836 Pfam WD domain, G-beta repeat 217 258 IPR001680 GO:0005515
Pumo3g00556 836 Pfam WD domain, G-beta repeat 688 718 IPR001680 GO:0005515
Pumo3g00556 836 Pfam WD domain, G-beta repeat 403 440 IPR001680 GO:0005515
Pumo3g00556 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 687 728 IPR001680 GO:0005515
Pumo3g00556 836 SUPERFAMILY WD40 repeat-like 188 770 IPR036322 GO:0005515
Pumo3g00556 836 SUPERFAMILY WD40 repeat-like 20 347 IPR036322 GO:0005515
Pumo3g00556 836 Gene3D - 409 517 IPR015943 GO:0005515
Pumo3g00556 836 Gene3D - 290 408 IPR015943 GO:0005515
Pumo3g00556 836 PRINTS G protein beta WD-40 repeat signature 706 720 IPR020472 -
Pumo3g00556 836 PRINTS G protein beta WD-40 repeat signature 245 259 IPR020472 -
Pumo3g00556 836 PRINTS G protein beta WD-40 repeat signature 334 348 IPR020472 -
Pumo3g00556 836 Gene3D - 171 289 IPR015943 GO:0005515
Pumo3g00556 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 218 267 IPR001680 GO:0005515
Pumo3g00556 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 638 671 IPR001680 GO:0005515
Pumo3g00556 836 FunFam Elongator acetyltransferase complex subunit 2 366 677 - -
Pumo3g00556 836 Gene3D - 678 836 IPR015943 GO:0005515
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00556 3 8485719 8490743 Pumo3g00556 3 8485719 8490743 ECH