Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00554 ATGGAATCAAACACATCAAGCTTTCTTTTGAACTCTTCAACTTTGCACTCAGTTTTCTACCAAGACAAACAAGATGATGGCATAATTGATCTGGGTCTTAGTCTCGGAACTGTTCAACATGAAGCTTACCATTCTTCTGGCAACTTGTATGATGATGACCTTATGAATTGGCCTCACTCTAATCTCAATCTCAAGAATTCAAGCACAATGCATTCTAGATCTGTCAACCAAAATTTTGATGAAGAGATAGAGGGGGTCCAGAGCAACGAGAGGTGGGCTTATGTGAAGGTTAACATGGATGGGGTTACCATTGGTAGGAAAATTTGTGTGCTTGATCACGGTGGATACTCAAGTCTAGCACTCCAATTAGAAGACATGTTTGGAAACCAATCTATTTCTGGATTACGATTGTTCCAATCGGGATCAGAGTACTCATTGTTCTACAAGGACAGACAAGATAATTGGAGGCCTGTCGGTGATGTACCATGGAAAGAGTTTATAGAATGTGTGAAGCGGTTGAGGATTGCAAGAAAGAATGCGGGCACTGTCTCATGTTCATCTAGATACAACTAA 573 0.4066 MESNTSSFLLNSSTLHSVFYQDKQDDGIIDLGLSLGTVQHEAYHSSGNLYDDDLMNWPHSNLNLKNSSTMHSRSVNQNFDEEIEGVQSNERWAYVKVNMDGVTIGRKICVLDHGGYSSLALQLEDMFGNQSISGLRLFQSGSEYSLFYKDRQDNWRPVGDVPWKEFIECVKRLRIARKNAGTVSCSSRYN 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00554 190 Gene3D - 86 188 - -
Pumo3g00554 190 Pfam AUX/IAA family 62 178 IPR033389 -
Pumo3g00554 190 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 52 179 IPR003311 GO:0005634|GO:0006355
Pumo3g00554 190 SUPERFAMILY CAD & PB1 domains 92 175 - -
Pumo3g00554 190 ProSiteProfiles PB1 domain profile. 92 180 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00554 Pumo-Chr3 8467666 8469096 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00554 82 178 B3 DNA Binding Superfamily AT1G34310 34.021 2.20e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pumo3g00554 AUX_IAA 1.3e-22 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00554 3 8467666 8469096 Pumo3g00554 3 8467666 8469096 ECH