Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00540 ATGGCCTCTGGTGAAGGGAGGCGGCGTCATCATGATCTTGTGCCTCTTGCTGCATTGCTCAAGAGAGAGATGAAGAGTGAGAAGATGGAGAAGCCTACTGTGAGGGTTGGACATGCAGCTCAGTCCAAGAAAGGGGAAGATTACTTTCTAATTAAGACTGATTGTCAGCGAGTGCCTGGGAACTCTTCATCATCCTTTTCTGTATTTGCGATCTTTGATGGGCATAATGGAAATGCTGCTGCCATTTTTACTAGGGAGCATTTGTTAAATCATGTGTTGGGTGCTCTTCCTCGAGGGCTTGGACGAGATGAGTGGTTACAAGCTTTACCAAGGGCATTGGTTGCTGGCTTTGTTAAGACTGACAAGGAATTTCAGAGCAGAGGAGAAACTTCTGGAACCACAGCCACATTTGTAATAGTGGATAGGTGGACTGTGACTGTCGCATCTGTTGGAGATTCCCGTTGTATACTAGATACCCAGGGTGGTGCTGTTACCTCCTTAACTGTTGATCACAGACTTGAAGAGAATATTGAAGAGCGGGAACGCGTAACTGCTAGTGGAGGTGAAGTTGGGAGGCTTAGCATTGTTGGTGGTGCTGAGATTGGTCCCCTTCGTTGCTGGCCAGGGGGTCTATGCCTTTCTAGGTCAATAGGTGACATGGATGTTGGGGAGTTCATAGTTCCAATACCATATGTCAAACAAGTGAAGCTATCGAAGGCTGGTGGGAGGCTTGTAATTGCCTCTGATGGCATATGGGATGCTCTATCCTCAGAAATGGCTGCAAAATCTTGCCGTGGTTTGCCTGCTGAACTTGCTGCTATGCAGGTTGTCAAGGAAGCACTAAGAACGAGAGGGTTAAAGGACGATACAACTTGCATAGTAGTTGACATAATCCCACCCGATAATGAATTGCCACCAACACCTCCCCCCACAAAACGGAACAAGCTGAGAGATCTTCTTTCCTTCAGGAAGAAGTCCCGTGATTCTGCCAGTAAGCTGTCAAAAAAGCTTTCAGCTATAAATATAGTGGAGGAACTTTTTGAAGAAGGATCAGCAATGCTTGCTGAAAGATTAGGAAATGATGACAACTTGAACTCAGGGCAATCAACATCTGGCCTTTTTGTCTGTGCTGTATGTCAAGTTGATCTTGCTGCAAGTGAGGGCATCTCTGTCCACGCAGGTTCCATTTTCTCCACCAGCTCCAAACCCTGGCAAGGTCCTTTTCTGTGTTCTGATTGCCGTGATAAGAAGGATGCTATGGAAGGAAAACGTCCAAGTGGAGTTAAGGTGTCATAG 1296 0.4645 MASGEGRRRHHDLVPLAALLKREMKSEKMEKPTVRVGHAAQSKKGEDYFLIKTDCQRVPGNSSSSFSVFAIFDGHNGNAAAIFTREHLLNHVLGALPRGLGRDEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIVDRWTVTVASVGDSRCILDTQGGAVTSLTVDHRLEENIEERERVTASGGEVGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPYVKQVKLSKAGGRLVIASDGIWDALSSEMAAKSCRGLPAELAAMQVVKEALRTRGLKDDTTCIVVDIIPPDNELPPTPPPTKRNKLRDLLSFRKKSRDSASKLSKKLSAINIVEELFEEGSAMLAERLGNDDNLNSGQSTSGLFVCAVCQVDLAASEGISVHAGSIFSTSSKPWQGPFLCSDCRDKKDAMEGKRPSGVKVS 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00540 431 Gene3D - 35 301 IPR036457 -
Pumo3g00540 431 SUPERFAMILY PP2C-like 40 297 IPR036457 -
Pumo3g00540 431 Pfam Protein phosphatase 2C 61 269 IPR001932 -
Pumo3g00540 431 SMART PP2C_4 27 295 IPR001932 -
Pumo3g00540 431 PANTHER PROTEIN PHOSPHATASE 38 296 IPR015655 GO:0004722|GO:0006470
Pumo3g00540 431 ProSiteProfiles PPM-type phosphatase domain profile. 28 297 IPR001932 -
Pumo3g00540 431 FunFam probable protein phosphatase 2C 5 35 302 - -
Pumo3g00540 431 CDD PP2Cc 43 297 IPR001932 -
Pumo3g00540 431 SMART PP2C_SIG_2 51 297 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00540 Pumo-Chr3 8099080 8104090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00540 1 430 PP2C-type Phosphatase Gene Family AT1G68410 78.670 0.0 693
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00540 3 8099080 8104090 Pumo3g00540 3 8099080 8104090 ECH