Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00277 ATGAGTTCAGCTAAGAACGCGGCAAACGCGGTTGGGGGCAAAACGGCAAGAGCATGTGACAGCTGCATAACGAAACGGGCACGTTGGTACTGTGCTGCCGATGATGCTTTTCTCTGCCAAGCTTGTGACTCTTCGGTTCACTCGGCCAACCCGTTGGCTAGGAGACACGAACGAGTCCGCTTGAAAACGGCGTCGTACAAGTCCACCACCGATGAACAACAACCTCCCACGTGGCACACTAAGAAACCTCGAACGCCGAGACATGGGAAACATTCTCGTAACAGCAACCCCTTCCATTTGGTCCCTGAAGTGGGTTCGGAAGAGGTGAATTCCCATGACGCGAACGAGGAGCAGCTTCTTTATAGGGTCCCCATATTCGACCCTTTTGTTGCTGAGCTATGTGGGACTAATAGTTCACCTTCTTCGGTGACTTCGACTGATCAAGGAGTAGCAGCTGTTAATGCTGAGGTTGAAAACAAAGGGATTCAGAGCAATGTTTTTTGTAGCAATGAGATGGAAAACTTGCATGGGATGCTTCCTTCTGATGCAGAGCTTGCTGAGTTTGCTGCTGATGTTGAGAGCTTGTTGGGTAGGGGGCTTGAAAACGAGTGCGTGGGGATGGAAGAATTGGGACTGGTTGATGCGAAAGAGGAGGAGTGTTCGGTGGGTAGTGGGAAGGTGAAGGTGGAAGAGGAAGAGAGCCCTGAGATGGAGATGGATATGGTGGGAAGAGATCAATCGTTTGAGCTTAACTTTGATTATGAAACGTGTGAAGAGGTGAAGGAGATTAAGGTTTGTGATTTGGATTTGGATTTGGGCAAAGAAAAGGGGAATGATGATGAGGTGAAAAGGAACAAGATATCGTTGCAGCTAGATTATGAGGCAGTAATCATCGCCTGGGCTAGCCAGAAGTCTCCGTGGACCACTGGTGACAAACCAAACTTGGACCCTGACGAGTGCTGGCACGAATGCATGGAAACTTGTGGAACGGCATTTCATCATCCTTACGGTGAAATGGGTGGATTTGGGATTCATCCAGTGATAATAGACGGGGGCAGAGAGGCAAGGGTGTCAAGGTACAGAGAAAAGCGCCGAACAAGGTTGTTCTCGAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAGAAGAGACCCAGAATGAAGGGGAGGTTTGTCAAGAGGGCTTCCTTTGCAGCTCCAACATTTCCTTTGCTAAATAAATAA 1227 0.4849 MSSAKNAANAVGGKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANPLARRHERVRLKTASYKSTTDEQQPPTWHTKKPRTPRHGKHSRNSNPFHLVPEVGSEEVNSHDANEEQLLYRVPIFDPFVAELCGTNSSPSSVTSTDQGVAAVNAEVENKGIQSNVFCSNEMENLHGMLPSDAELAEFAADVESLLGRGLENECVGMEELGLVDAKEEECSVGSGKVKVEEEESPEMEMDMVGRDQSFELNFDYETCEEVKEIKVCDLDLDLGKEKGNDDEVKRNKISLQLDYEAVIIAWASQKSPWTTGDKPNLDPDECWHECMETCGTAFHHPYGEMGGFGIHPVIIDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAAPTFPLLNK 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00277 408 Pfam B-box zinc finger 16 59 IPR000315 GO:0008270
Pumo3g00277 408 ProSiteProfiles CCT domain profile. 353 395 IPR010402 GO:0005515
Pumo3g00277 408 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 7 397 - -
Pumo3g00277 408 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Pumo3g00277 408 MobiDBLite consensus disorder prediction 58 100 - -
Pumo3g00277 408 SMART bboxneu5 14 61 IPR000315 GO:0008270
Pumo3g00277 408 Pfam CCT motif 353 395 IPR010402 GO:0005515
Pumo3g00277 408 CDD Bbox1_BBX-like 18 61 - -
Pumo3g00277 408 MobiDBLite consensus disorder prediction 66 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00277 Pumo-Chr3 3558339 3560473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00277 5 395 C2C2-CO-like Transcription Factor Family AT1G25440 47.642 3.99e-106 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pumo3g00277 zf-B_box 8.3e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00277 3 3558339 3560473 Pumo3g00277 3 3558339 3560473 ECH