Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00275 ATGCCCGAGTCTCGGAAACAACCGGCTTCTAGACCGAAGCAAAAGCTTCACCACTCCTTGCAAGAGTCCAAGGCGATGAGAAAACTGCGCATCGTTTACAACGATCCTGATGCTACTGATTCATCCGAAGATGAGTCCGAGAGGGTTCAGAACCCGAGAAGAGTAAAAAGAAGCGTGTGTGAGATCTCTCTTCCCCCTCTTCCTCAAACATTCACCACTCCTGAAACCAGTTCCTGTGAGGTGAATAGCAACAAAAATGCAATGATGAGGGTTTGCACTGAAGGTCAACCCCCCCAGAGTAAGAAGAGGGTTTTAACTCAAACCCCATCAATCTCAACGAGGAGGAACACTTCTGGGAAATACAGAGGTGTTAGGCAGAGAAAATGGGGTAAATGGGCTGCTGAGATTCGTGACCCGTTTCAGAACACTCGTATTTGGCTCGGCACTTTCAACACTGCAGAAGAGGCTTCCCAAGCCTATGAGGCCAGAAGGCTTGAGTTTGCAGCTATGGCAAAGGCTCAAGCTTACAAAACTGCTTCTGGACCTTCTGCTTCTGAACCTTCTGATAAGAGTAATTGCTGTAACTCTTCTGCTGCTAATGCTGCTGCTGCTGCTGTGTCTGTATCTGAGAAGTTTTCTACTACTTCTGATGACTCAGAAGAGAGTGTGTTGTCACACAATTCACCATCCTCTGTGCTTGAGTTGGATACCTCGGCTTCCAAATCCATTGAAAAGGGTAATGTTTCAACTATGGAGGAGGCTAATGATTTGGTGGCTGAACTTGCAGGGCTAGAGATACCAGATTTGAGTCTGTTGAGCATGCCACCACCATCTTCTGCTGGGATTGAGCCAAACTTTGGGCTTGATTTTGATTGGCTATCGTTTGATGATTATGGACAGGGTTTTGATGATTTCGGTGGCTTGGAAGATATTCAAATTTGTGGGTTTGATGACAATGAGCCTAGTGAGCTTCCTGATTTCGATTTTGGTGATTTTGGTGCTGATGAGTTTGCTGGTTGGACTGAGGAGCCCCTCAATATACCTTGTGCCTAA 1053 0.4625 MPESRKQPASRPKQKLHHSLQESKAMRKLRIVYNDPDATDSSEDESERVQNPRRVKRSVCEISLPPLPQTFTTPETSSCEVNSNKNAMMRVCTEGQPPQSKKRVLTQTPSISTRRNTSGKYRGVRQRKWGKWAAEIRDPFQNTRIWLGTFNTAEEASQAYEARRLEFAAMAKAQAYKTASGPSASEPSDKSNCCNSSAANAAAAAVSVSEKFSTTSDDSEESVLSHNSPSSVLELDTSASKSIEKGNVSTMEEANDLVAELAGLEIPDLSLLSMPPPSSAGIEPNFGLDFDWLSFDDYGQGFDDFGGLEDIQICGFDDNEPSELPDFDFGDFGADEFAGWTEEPLNIPCA 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00275 350 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Pumo3g00275 350 PRINTS Ethylene responsive element binding protein signature 143 159 IPR001471 GO:0003700|GO:0006355
Pumo3g00275 350 MobiDBLite consensus disorder prediction 99 119 - -
Pumo3g00275 350 Gene3D AP2/ERF domain 119 179 IPR036955 GO:0003700|GO:0006355
Pumo3g00275 350 MobiDBLite consensus disorder prediction 1 54 - -
Pumo3g00275 350 MobiDBLite consensus disorder prediction 93 123 - -
Pumo3g00275 350 CDD AP2 120 167 IPR001471 GO:0003700|GO:0006355
Pumo3g00275 350 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 237 - -
Pumo3g00275 350 MobiDBLite consensus disorder prediction 1 34 - -
Pumo3g00275 350 SMART rav1_2 120 174 IPR001471 GO:0003700|GO:0006355
Pumo3g00275 350 ProSiteProfiles AP2/ERF domain profile. 120 182 IPR001471 GO:0003700|GO:0006355
Pumo3g00275 350 Pfam AP2 domain 120 166 IPR001471 GO:0003700|GO:0006355
Pumo3g00275 350 SUPERFAMILY DNA-binding domain 120 167 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00275 Pumo-Chr3 3507925 3508977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00275 11 349 AP2-EREBP Transcription Factor Family AT1G68550 37.607 3.07e-48 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo3g00275 AP2 3.8e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00275 3 3507925 3508977 Pumo3g00275 3 3507925 3508977 ECH