Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00266 ATGGCCACCGATGCCCGTGACTCGCGTCGCAAGCATCGCCGATCATCCTCTCCGGAGGACGTGGACAGATCCTCGAAGCGCCACAAGCACCGCCACCACAGCCACCGCCACCGCCACGGGAGCAAAAAGCGCGACGAAGAGATTGAATTCGATGATCGAACAATTGCTGCGGTTCCGTCTCCAACTCCGCACAGACATCTTCCTGACGACGATGTGGAGGAGGGAGAGATCCTCGAAGACGAGGCTCTCGACGGCGAGGTTGGAAAAAAGGAGACGGAATCCGATGTCGAACCTGGTGAAATCAAGGTGACAGGAGATCGAGATGTTCGATCTGATAATCAAAATTCGGGACACCTCACTAAAAATTCAGAAACTAGAAATGAGGACATTAGGGATGATAAATTTATTAGTCCTGCAATTGATGCAGAAGATGGTGTCTCTCCTAATCGTTCAAGTGCTGAGACTCGAGATGGAAAGCATGCTCAAGCTCATACAGATGGTGTGGGCAATGGTTATTTGGATCCTAAATCTTCCAAAGGGGATAAGTGGCAGAATGGGGAACTTGGACATTTTAAAGGGAATGAGAAACTAAAAGGTGACTTTGATGACGAAACACTGGAGGCTAATGCGAGGAAAGCATATTACCATAGGAATTCATCCTCCGAAAGTGGAGGAGAAAAATATAGAATATCAGGAAGTTCTCCTTCTCATGGTAGATATAGAAGTCGATCAAGATCAATTGGTCATACTAGAGACAGGTCTCGTTCTCGTAGTATCATAGATGAATATGCTCATTCCAAGAGAAGGCGCTCTGACTATGACCATGATGAGGAAAGAGTGAGGGAACATGGAAGGGAGCATGGTCATGGCAATGTGGTAGATGATAGAAGGGAATACAGTACCAGATATCACAGTCGAGAGGCCCGGGATAGAGATAGGAGTAGGGATAGAGATGTGGATAGAGACTTACACAGAGAAAAGAAACAAGAGGAAACAATCAGGGGTAAAGAGATTGAGTGGGAACACAAAAGGGGAAAGGAACGTGAAAGGAGCCGTGAGAGGTATAGAAGGGATGTAGAAAAAGATAGGAGCAGGGAAAGGGAGGAGGATAGGGGCAGGAGACAAGAAAAGGAAAGAGATAGGAGCTGGGATACAGTGTTTGAGAGGGATTGGAGAAGGGAAAAGGAAAGAGATAGAAGTAGGGACAGAACAAGAGGTGGCAAGAGAGATAGAGACCTGGAGAATGAAAGGGATGATAAGAATCGGGAAAGAGATAATATTAAGGAGAGGGAAAGGCGAGATGATAGATATAAGCACAAAGATAGAGACAATGCAAATGGTAAGGATAGGCATCTGCGTCATGAGGATGGTTATGACAATGGAGATAGATATAGGAAACATTCAAGGCATGAAGAAAATGAATACCATTGGGAAAGAAAAAGAAATTCTGATAATCCTGTAAAGGTTTATAACTCAATGGGAATTACTGCTGAAGTGGATGAAAGCAAACTAACAAGTGAGGTTGAACCAGATGACTTAGAGGAGGATACATTGCAATTACCTGAGCAAGAAGAGGAAGATCTCAACAGGATCAAAGAAGAGAGTAGAAGAAGAAGGGAAGCAATAATGGAGAAATACAAGAAGCAGCATCAGCAAGTAGACGAAGCAGTTGGAAATGAAGGAAAAGACAAGGATGCAGACATTGCTACTGACATCTCTGAAGCACGTGATGATAAGAATGGTGATGCTGATTATGTGGAGCAGTCATTTGCTGTTGGGAAATCTCCTGAAAATGTGAATGTTGATTCTAAGAAGATATCTCTTGCTGGAGGCCTGGGAGAGGGTACTCCAAAGAGTGAAAGGTCAGAGGACAAGTTTTGTGATGATATATTTGGTGAGACACCAACGGGAGTTCGAAAATCAGGAAAAGGAGATGGTTTACTGATTGAGAGGGTTGGCCTACATGACAATTGGGACGATGCAGAGGGTTATTACAGCTATCGTATTGGTGAAATACTCGATGGCCGATATGAAGTCACTGCTGCACATGGGAGGGGTGTCTTTTCAACAGTTGTTCGGGCAAAGAATCTAAAGATGGGAAATGGTGAGCCAGAAGAGGTAGCAATAAAAATTATTCGTAATAATGACACCATGTACAAGGCTGGTATGGATGAATTGGTCATATTGAAGAAATTAGTAGGTGCAGATCCAGACGATAAGCGTCATTGTGTTCGTTTCCTTTCAAGTTTTAGATACAGGAATCATCTTTGTTTAGTTTTTGAATCTCTTAATATGAATCTGCGTGAGGTTTTAAAGAAGTTTGGTCGCAATATTGGCCTTAGGCTAACAGCTGTGAGAGCATACGCAAAACAGCTTTTTATTGCTCTGAAGCATCTCCGGAACTGTGGTGTTCTTCATTGTGATATAAAGCCGGATAATATGTTGGTAAACGAGGCTAAAAATGTTTTGAAGCTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAATACTTGGCTTGCCATATGATCATCCATTGGATATTTGGTCTGTAGGCTGTTGTTTGTATGAGTTGTATATAGGGAAGGTTCTTTTCCCAGGGCTTACAAACAATGACATGCTACGGCTTCACATGGAACTGAAGGGCCCTTTTCCAAAGAAGATGCTACGTAAGGGAGCATTTACTGAACAGCATTTTGATCAGGACCTGAACTTTCTTGCTACTGAGGAGGATCCTGTAACAAAAAAGACCATAAAGCGGCTGATTCTCAACATTAAGCCAAAGGATATTGGGACACTCATCACTGGCTCTCCCGGGGAGGATCCGAAAATGTTAGCCAACTTTAAGGATCTTCTGGAAAAAGTTTTTGTCTTGGATCCAGACAAGAGGCTAACGGTGTCACAAGCTCTGAACCACCCATTCATCACTGGCAAGTGA 2988 0.4337 MATDARDSRRKHRRSSSPEDVDRSSKRHKHRHHSHRHRHGSKKRDEEIEFDDRTIAAVPSPTPHRHLPDDDVEEGEILEDEALDGEVGKKETESDVEPGEIKVTGDRDVRSDNQNSGHLTKNSETRNEDIRDDKFISPAIDAEDGVSPNRSSAETRDGKHAQAHTDGVGNGYLDPKSSKGDKWQNGELGHFKGNEKLKGDFDDETLEANARKAYYHRNSSSESGGEKYRISGSSPSHGRYRSRSRSIGHTRDRSRSRSIIDEYAHSKRRRSDYDHDEERVREHGREHGHGNVVDDRREYSTRYHSREARDRDRSRDRDVDRDLHREKKQEETIRGKEIEWEHKRGKERERSRERYRRDVEKDRSREREEDRGRRQEKERDRSWDTVFERDWRREKERDRSRDRTRGGKRDRDLENERDDKNRERDNIKERERRDDRYKHKDRDNANGKDRHLRHEDGYDNGDRYRKHSRHEENEYHWERKRNSDNPVKVYNSMGITAEVDESKLTSEVEPDDLEEDTLQLPEQEEEDLNRIKEESRRRREAIMEKYKKQHQQVDEAVGNEGKDKDADIATDISEARDDKNGDADYVEQSFAVGKSPENVNVDSKKISLAGGLGEGTPKSERSEDKFCDDIFGETPTGVRKSGKGDGLLIERVGLHDNWDDAEGYYSYRIGEILDGRYEVTAAHGRGVFSTVVRAKNLKMGNGEPEEVAIKIIRNNDTMYKAGMDELVILKKLVGADPDDKRHCVRFLSSFRYRNHLCLVFESLNMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLPYDHPLDIWSVGCCLYELYIGKVLFPGLTNNDMLRLHMELKGPFPKKMLRKGAFTEQHFDQDLNFLATEEDPVTKKTIKRLILNIKPKDIGTLITGSPGEDPKMLANFKDLLEKVFVLDPDKRLTVSQALNHPFITGK 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00266 995 MobiDBLite consensus disorder prediction 122 139 - -
Pumo3g00266 995 FunFam Serine/threonine-protein kinase PRP4 homolog 737 993 - -
Pumo3g00266 995 MobiDBLite consensus disorder prediction 1 535 - -
Pumo3g00266 995 PANTHER DUAL SPECIFICITY PROTEIN KINASE 392 993 - -
Pumo3g00266 995 CDD STKc_PRP4 676 992 IPR044092 GO:0004674|GO:0006468|GO:0045292
Pumo3g00266 995 Gene3D Transferase(Phosphotransferase) domain 1 737 993 - -
Pumo3g00266 995 MobiDBLite consensus disorder prediction 245 485 - -
Pumo3g00266 995 MobiDBLite consensus disorder prediction 82 114 - -
Pumo3g00266 995 SUPERFAMILY Protein kinase-like (PK-like) 664 994 IPR011009 -
Pumo3g00266 995 MobiDBLite consensus disorder prediction 505 522 - -
Pumo3g00266 995 SMART serkin_6 677 992 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00266 995 MobiDBLite consensus disorder prediction 608 642 - -
Pumo3g00266 995 Pfam Protein kinase domain 679 992 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00266 995 MobiDBLite consensus disorder prediction 180 211 - -
Pumo3g00266 995 Gene3D Phosphorylase Kinase; domain 1 648 736 - -
Pumo3g00266 995 MobiDBLite consensus disorder prediction 214 241 - -
Pumo3g00266 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672|GO:0006468
Pumo3g00266 995 MobiDBLite consensus disorder prediction 26 40 - -
Pumo3g00266 995 ProSiteProfiles Protein kinase domain profile. 677 992 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00266 995 FunFam serine/threonine-protein kinase PRP4 homolog 648 736 - -
Pumo3g00266 995 Coils Coil 410 433 - -
Pumo3g00266 995 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00266 Pumo-Chr3 3381129 3387245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00266 630 994 MAP Kinase Gene Family AT2G18170 30.446 2.88e-27 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Pumo3g00266 Pkinase 1.5e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00266 3 3381129 3387245 Pumo3g00266 3 3381129 3387245 ECH