Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00260 ATGCAAAGCTACAACACAACCGAATCAGAATCAACCTCACCACTCTATGCTCATTCTCCCTTCTTTCACCGGGGAAATGACACCAGCCGAAATCCAACGCGTTTCTCGGATCTTCAGCGTTCTTTTCCGCAACACGAGGCCGTTGATTTAAGCTCAAGTTCTGTGTTTGGTGCAAAGTCGAGCAATGTGGCTGTTGTTGCAAGCAACTTGCAGTGTGGGACATTCAACACGAACCTTGGGTGTGCAGAGTTTGGTTCGACAGTTGCAGGGTGCGTCGAGACAGAGCGGCAACCCATGTTTCAGAGAGGAACCACTAACGCCACCCTGTCCATGGGGAACCAGCATGTTGAGAATTGGGCTGATGATAGCCAACACACTGAAGATACTTGCACAGATATTGACACCGATGATAGAAACCAATGTTTCTCAACCGTGTCTTGGTGCAATGGAGTTGGGGATGGGGCACTTGTAGTTGTGGATTCCCAGGATCAAAGTAAGACTAAGGTTAAAGCTGAAGACCAGAAGACTATACGTAGGCTAGCTCAAAATCGGGAGGCTGCGAGGAAGAGTCGGTTGAGGAAAAAGGCATATGTGCAACAATTGGAGAACAGTCGAGTTAGGCTTTCGCAATTAGAGCAAGAGCTTCAACGGGCACGTCAGCAGGGTGTATTTATTGCAAGTGGAATCACGGGGGATCGTGCTCATTCAGTTGTTGGAAATGGTGCATTAGCCTTTGACATGGACTATGCCCGTTGGGTTGATGAGCATCAACGGCTGATCAATGAGATAAGATCAGCTATAAATTCTCAAATGGGTGACACTGAGCTGCACCTCCTTGTTGATGGAGTCATGGCACATTATGATGAATTATTTAGGTTGAAGAGCATAGGTGCAAAGGCTGATGTATTTCACATACTTTCTGGGATGTGGAAGACACCTGCAGAAAGATGCTTCATATGGCTGGGTGGATTTCGTTCATCTGAACTTCTCAAGATAGTTAGAAACCAGCTTGAGCCGTTAACCGAACAGCAGTTGATGGGCATTTACAATCTGCAGCAGTCTTCCCAGCAGGCTGAGGATGCATTATCACAAGGCATGGAAGCATTGCAGCAGTCTCTTTCAGAGACACTTTCCTCCTCCTCCCTAGGGCCCTCTGGTTCTGGAAATGTTGCTGAGTACATGGGCCAAATGGCAATTGCATTGGGCAAGCTTGCCACACTAGAGAATTTCCTTCATCAGGCTGACCTCTTGAGGCAACAAACACTGCAACAGATGCGTCGAATTTTGACCACGTACCAAGCTGCTCGTGCTCTCCTTGTCATAAATGATTACGTTTCACGGCTTAGAGCTCTTAATTCATTATGGTTAGCGTGCCCTAGAGAGTACTAG 1389 0.4723 MQSYNTTESESTSPLYAHSPFFHRGNDTSRNPTRFSDLQRSFPQHEAVDLSSSSVFGAKSSNVAVVASNLQCGTFNTNLGCAEFGSTVAGCVETERQPMFQRGTTNATLSMGNQHVENWADDSQHTEDTCTDIDTDDRNQCFSTVSWCNGVGDGALVVVDSQDQSKTKVKAEDQKTIRRLAQNREAARKSRLRKKAYVQQLENSRVRLSQLEQELQRARQQGVFIASGITGDRAHSVVGNGALAFDMDYARWVDEHQRLINEIRSAINSQMGDTELHLLVDGVMAHYDELFRLKSIGAKADVFHILSGMWKTPAERCFIWLGGFRSSELLKIVRNQLEPLTEQQLMGIYNLQQSSQQAEDALSQGMEALQQSLSETLSSSSLGPSGSGNVAEYMGQMAIALGKLATLENFLHQADLLRQQTLQQMRRILTTYQAARALLVINDYVSRLRALNSLWLACPREY 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00260 462 PANTHER TRANSCRIPTION FACTOR TGA9 102 461 - -
Pumo3g00260 462 CDD bZIP_HBP1b-like 175 227 - -
Pumo3g00260 462 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 173 217 IPR004827 GO:0003700|GO:0006355
Pumo3g00260 462 ProSiteProfiles DOG1 domain profile. 242 458 IPR025422 GO:0006351|GO:0043565
Pumo3g00260 462 Coils Coil 194 221 - -
Pumo3g00260 462 SMART brlzneu 171 242 IPR004827 GO:0003700|GO:0006355
Pumo3g00260 462 Gene3D - 174 222 - -
Pumo3g00260 462 SUPERFAMILY Leucine zipper domain 175 218 IPR046347 GO:0003700|GO:0006355
Pumo3g00260 462 FunFam BZIP family transcription factor 174 223 - -
Pumo3g00260 462 Pfam Seed dormancy control 260 334 IPR025422 GO:0006351|GO:0043565
Pumo3g00260 462 MobiDBLite consensus disorder prediction 1 16 - -
Pumo3g00260 462 Pfam bZIP transcription factor 174 214 IPR004827 GO:0003700|GO:0006355
Pumo3g00260 462 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 178 193 IPR004827 GO:0003700|GO:0006355
Pumo3g00260 462 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00260 Pumo-Chr3 3329883 3335294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00260 12 461 bZIP Transcription Factor Family AT1G68640 55.699 1.44e-161 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pumo3g00260 DOG1 2.6e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00260 3 3329883 3335294 Pumo3g00260 3 3329883 3335294 ECH