Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00867 ATGGGTTTAAGTTCTAAGCAGGTTTCTAACAGAGGGCTTGATTGGAACCAGACCTTGTTGCAGGCTCAAAATTTGGAGCTCCCAAAGCCTCCTCCTATGAAGAAACAACAGCAACAAACTCAGCCATCAGAGCCTTTGAAGTGTCCAAGATGTGACTCTATTAACACCAAATTTTGTTACTACAACAACTACAACAAGTCTCAGCCCCGCCATTTCTGCAGAGCTTGCAAGAGGCACTGGACTAAAGGTGGAACTCTACGCAATGTTCCTGTTGGTGGTGGCAGGAAGAATAAGCGAGTCAAGAAATCAACCACTCCAACCACAGCCACAACCACAGCCACCACTTCTATTAGTACCACCACCACATCAAATGCCAACATGGATGGTGAGTTGAGTACCCACATCACAATCCCTCCTCTTGCAGTGGATGATCACAAAACCACACCTTCCTCTCTCTATCAATCCTTGTGCCTGCCCCAACAGAATCTGATGAGTACCAAAGACTCAGAAGAAGGCAAAGACTTTGGTATTGGTAATGGCATCTTTCTGAGTTCAACTGTGCCTTTTCCTCAAAACCAAAGCCTTCTCTTCCCCTTCACAACATCAAACTCCTTTGACACAAACCAATGTGCAATATCATCCTCTTTGCGATCCTCCAGCGTGTATAACTATGGTGAAGAGTTTAAAATAATGGAGGAGCCAACCATCAACAGTGTAATGCCCAACACTAGTGGTGGCACCAACACACAGCCATGGGAGATAGCTGCAACAAGTTCTGGCTTGGAAATGTCAAACTATTGGACTTGGGAGGACATTGATTCGTTGGTCTCAACTGATCTAAATGTTCCTTGGGATGATTCTGATATCAAACCATGA 876 0.4486 MGLSSKQVSNRGLDWNQTLLQAQNLELPKPPPMKKQQQQTQPSEPLKCPRCDSINTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVKKSTTPTTATTTATTSISTTTTSNANMDGELSTHITIPPLAVDDHKTTPSSLYQSLCLPQQNLMSTKDSEEGKDFGIGNGIFLSSTVPFPQNQSLLFPFTTSNSFDTNQCAISSSLRSSSVYNYGEEFKIMEEPTINSVMPNTSGGTNTQPWEIAATSSGLEMSNYWTWEDIDSLVSTDLNVPWDDSDIKP 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00867 291 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677|GO:0006355
Pumo2g00867 291 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 33 214 IPR045174 GO:0003700|GO:0006355
Pumo2g00867 291 Pfam Dof domain, zinc finger 45 98 IPR003851 GO:0003677|GO:0006355
Pumo2g00867 291 MobiDBLite consensus disorder prediction 27 47 - -
Pumo2g00867 291 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677|GO:0006355
Pumo2g00867 291 MobiDBLite consensus disorder prediction 87 130 - -
Pumo2g00867 291 MobiDBLite consensus disorder prediction 103 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00867 Pumo-Chr2 13181304 13183710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00867 29 180 C2C2-Dof Transcription Factor Family AT5G60200 40.491 3.78e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo2g00867 zf-Dof 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00867 - - gmx:778119 515.383