Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00717 ATGGCCGAGGAATCTCAAGGGATTAAGCTGTTTGGTGCAATGATTACATTGAACAGTGGGGAAGCAAACAAAGGAGAAAAAGGAAGCGAATATGAGAGGGTGGAGAAGAAAGCAGAGAAGATAATACCCTGCCCGAGATGCAAGAGCATGGAAACTAAATTCTGTTACTTCAATAACTACAACGTTAATCAGCCAAGGCATTTTTGCAAGAGCTGCCAGAGGTACTGGACGGCCGGTGGGGCCCTCCGAAACGTGGCGGTGGGCGCCGGACGCCGGAAGGCTAAGTCCCCGTGCCATGGAGGCGGTGAGTTCATGGATGGGCGTGTCTTTGAAAGTTCTGAAGATGAAAACAAGTTTGAGATGGATCGGGGGCACGTTGCCATGCCCAACACTGATTTCCGGCAGATTTTTCAGGCCAAGCGGCAGAGGGTCACCTCAGCTCAGCATCAAGGTCAATAA 459 0.5076 MAEESQGIKLFGAMITLNSGEANKGEKGSEYERVEKKAEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKSCQRYWTAGGALRNVAVGAGRRKAKSPCHGGGEFMDGRVFESSEDENKFEMDRGHVAMPNTDFRQIFQAKRQRVTSAQHQGQ 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00717 152 Pfam Dof domain, zinc finger 40 96 IPR003851 GO:0003677|GO:0006355
Pumo2g00717 152 ProSitePatterns Zinc finger Dof-type signature. 44 80 IPR003851 GO:0003677|GO:0006355
Pumo2g00717 152 PANTHER CYCLIC DOF FACTOR 2 25 100 IPR045174 GO:0003700|GO:0006355
Pumo2g00717 152 ProSiteProfiles Zinc finger Dof-type profile. 42 96 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00717 Pumo-Chr2 11308374 11310985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00717 3 143 C2C2-Dof Transcription Factor Family AT1G29160 50.909 8.87e-45 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo2g00717 zf-Dof 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00717 - - gmx:100820604 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00717 2 11308374 11310985 Pumo2g00717 2 11308374 11310985 ECH