Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01772 ATGTCAGAGGTTAAAGACCATGCTGCAATAAAGCTTTTTGGAAGGACAATTTCGCTGCCACACATCAATGATTCTTCTTCTTCTTCTTTTTCTTCTGCACCTGCTCGTGCCCCCGCCACTTGTCCTTCATCTTCTTCCTCTTCTCCTCGTGAAGTTACCTCTGAAACACCACAACAAGAGCCTGAGGAACCATCAAGGAAAGAGCTTACCTCACCACAAGAAAATAATGCCTCACATCAAACCACAGAGGAATTAAAATCTCCCACAACATCTTCAGGCATATTGGAGAATCCTGAGACTCCTTCAGCTGAAACCGAGACATCAGTACCGAAATCCTCCACAAATGGACAACAAAGCGAGGCAGGTGCTTCTGAAGACAAAACACTCAAGAAACCTGACAAGATACTTCCATGCCCGCGATGCAACAGCATGGACACCAAATTCTGTTACTTCAACAACTACAATGTCAACCAGCCTCGGCATTTCTGCAAGAACTGTCAAAGATACTGGACTGCAGGAGGAACAATGAGGAATGTGCCGGTAGGAGCTGGTCGCCGAAAGAACAAGAACTCTTCGGCGGGCACGTCACTTTACCGGCACTTAATGGTCCCGGAGGCACTCCAAGGAGCTACACTGAATGCCCCTAATGGATTGCATAATGCTGTTTTGGGAAATGGTGCTGCTGTATTGACCTATGGTCCTGATACTCCCCTTTGTAACTCAATGGCATCTATGTTGAACATTGCTGAGAGAGCACAAGGTTGTGTTCCAAATGGGTTTCATGCACCTGAGCCAAATGGTTTTGTTTCCTATAGAAAGGAGGATGATGGGAGTGGCCACTCTACTGGAGGTTCTCTTGCAACAAGTTCAACTTCAAGCCATACTGGCTCACATGAATCAGTGGATAAAAGAGCTGAAGGTTTCACTGCTCAATTGCCTTACATCCCAACTGCCCCTTGGCCTTATCCTATGCATCCTTCATTTTGCCCACCAGGCTACCCTTTATCATTCTACCCTACACCAGCAGCATATTGGGGTTGTATGCCACCACCCTCTTGGAATAATAACATATCATCTATCTCACCCCAATCATCTGTCAACAACTCTGTCTCTGCCCCTACTTTGGGGAAACACTCAAGGGATGGAACCATCATTGCCCCATCCAATTCACACAAAGAAATGCGTGATGTAGAGCACAACAGCTCAGACCACAGTGTCTTGATCCCCAAGACTCTCAGAATTGATGACCCTAATGAAGCTGCAAGGAGTTCCATGTGGTCAGCACTAGGGATCAAGAATGACAAGGCCAGCTCTGGAGGCCTCTTCAAACCTTTTCCATCCAAGGGAAATGACATGAATCGTGCGGTCGAAGCATCGCCGGTGTTGCAAGCCAACCCTGCCGCTCTATCCCGGTCTCTCACCTTCCATGAACAGACCTAA 1440 0.4722 MSEVKDHAAIKLFGRTISLPHINDSSSSSFSSAPARAPATCPSSSSSSPREVTSETPQQEPEEPSRKELTSPQENNASHQTTEELKSPTTSSGILENPETPSAETETSVPKSSTNGQQSEAGASEDKTLKKPDKILPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSSAGTSLYRHLMVPEALQGATLNAPNGLHNAVLGNGAAVLTYGPDTPLCNSMASMLNIAERAQGCVPNGFHAPEPNGFVSYRKEDDGSGHSTGGSLATSSTSSHTGSHESVDKRAEGFTAQLPYIPTAPWPYPMHPSFCPPGYPLSFYPTPAAYWGCMPPPSWNNNISSISPQSSVNNSVSAPTLGKHSRDGTIIAPSNSHKEMRDVEHNSSDHSVLIPKTLRIDDPNEAARSSMWSALGIKNDKASSGGLFKPFPSKGNDMNRAVEASPVLQANPAALSRSLTFHEQT 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01772 479 MobiDBLite consensus disorder prediction 19 55 - -
Pumo1g01772 479 ProSiteProfiles Zinc finger Dof-type profile. 136 190 IPR003851 GO:0003677|GO:0006355
Pumo1g01772 479 Pfam Dof domain, zinc finger 133 190 IPR003851 GO:0003677|GO:0006355
Pumo1g01772 479 MobiDBLite consensus disorder prediction 266 301 - -
Pumo1g01772 479 MobiDBLite consensus disorder prediction 364 387 - -
Pumo1g01772 479 ProSitePatterns Zinc finger Dof-type signature. 138 174 IPR003851 GO:0003677|GO:0006355
Pumo1g01772 479 MobiDBLite consensus disorder prediction 70 123 - -
Pumo1g01772 479 MobiDBLite consensus disorder prediction 14 135 - -
Pumo1g01772 479 PANTHER CYCLIC DOF FACTOR 2 1 478 IPR045174 GO:0003700|GO:0006355
Pumo1g01772 479 MobiDBLite consensus disorder prediction 281 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01772 Pumo-Chr1 30042792 30046415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01772 9 477 C2C2-Dof Transcription Factor Family AT5G39660 38.645 1.09e-86 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo1g01772 zf-Dof 6.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01772 - - gmx:100813315 684.1