Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00342 ATGGTGTTGATCAACGAAGAGATAGTGGAGCCCTACGCACAAGAGGAAATCACCGAAGAGGAGAGCGAAGCGGAGTGCATCGACTACGACCAGCTCAAGAAACGCATGTGGAAGGATCGGATCCTTCTTCAGAAGCTGAAGGAGAAGCGCGACAAACAAGAGCCAGACATAGAAGCAAAACAAGAGGCATCGAGAAGGAAGAAGATGTCACGAGCACAAGATTCGGTCCTCAAGTACATGGTCAAGATCATGGAGGTTTGCAACGCCCAAGGTTTCGTTTACGGCATCATCCCAGAGAAGGGTAAACTCGTCTCTGGCTCCTCCGACAGCCTGCGCGAGTGGTGGAAGGACCAAAACGCCCCCGTTGCAATCCCAAAGCTTGAAAAAGCTGATGACTTGGATCTAGCTTCCTACGTACACCTCCTCCAAGAATTGCAAGACTCTACTTTGGGTTCTCTTCTTTCTGCTCTCATGCAACACTGTGTCCCTCCACAAAGGAGGTTCCCTTTGGAGAGAAAGGCTTATCACCGGGGACGAAATTTGGTGGGGAAGCCCCATGACTTGAAAAAGGCTTGGAAAGTTTCTGTCTTCCCTGCAGTCATCAAACACATATCTCCGGATTTTGATAAGCTCAGAAAGTTGGTGACTCAGTCCAAGACCTTGCAAGATAAGATGACAGCCAAGGATAGTGCCACATGGTCCAAAGTCATGAACCAAGAAGAGGCTTTGCTGGGACTAACTGACAAGTGCCTTAAAATATCTTCCTCAAAGGACGATGAAGATGATGAGGAGGGAGAAGGGTCTAGATTTGGTGTTGGTGTTGAGGATATGCTATACGCTTGTCAAAACGCTGAGTGTCTGCAGAGTGAGTTGTCTATGGGGTTTGCTGATAAAAACTCGAGGCTGGACCATGAAGCTCTATGTGCTTACCGCACAGAGGATAGCCATGTTCCTTTTCACCGTTATCTCTCCAATGATGCACCACCCATCACCACTTTGGATGATTGGATGAATGTGGCTGTTCAGAATGATGTGAGCCTTGGAGAGGCTGCGGGTGGGAGTGGAACATTCGAAGATGACCCTTGTTACTGGCATAATGTCGTGGAAAATCTTGAATTGCAAGCGGCACTAGAGTTGTTGCTCAAATTATTCCACTCGGACAAGAGGATGCAACCTCAATTTGGGACTTGGGAACCCATCCACCGCAAGGATAGTGTTTACTTTAACACTGTTAATTCTAATGCTTTTGCTTTATTTGTAGTAAAGTAG 1269 0.4728 MVLINEEIVEPYAQEEITEEESEAECIDYDQLKKRMWKDRILLQKLKEKRDKQEPDIEAKQEASRRKKMSRAQDSVLKYMVKIMEVCNAQGFVYGIIPEKGKLVSGSSDSLREWWKDQNAPVAIPKLEKADDLDLASYVHLLQELQDSTLGSLLSALMQHCVPPQRRFPLERKAYHRGRNLVGKPHDLKKAWKVSVFPAVIKHISPDFDKLRKLVTQSKTLQDKMTAKDSATWSKVMNQEEALLGLTDKCLKISSSKDDEDDEEGEGSRFGVGVEDMLYACQNAECLQSELSMGFADKNSRLDHEALCAYRTEDSHVPFHRYLSNDAPPITTLDDWMNVAVQNDVSLGEAAGGSGTFEDDPCYWHNVVENLELQAALELLLKLFHSDKRMQPQFGTWEPIHRKDSVYFNTVNSNAFALFVVK 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00342 422 Pfam Ethylene insensitive 3 31 172 IPR047091 GO:0003700
Pumo1g00342 422 Pfam Ethylene insensitive 3 184 241 IPR047091 GO:0003700
Pumo1g00342 422 SUPERFAMILY DNA-binding domain of EIN3-like 139 243 IPR023278 GO:0003700|GO:0005634
Pumo1g00342 422 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 15 173 IPR006957 GO:0003700|GO:0005634
Pumo1g00342 422 Gene3D - 58 138 IPR023278 GO:0003700|GO:0005634
Pumo1g00342 422 Gene3D - 181 249 IPR023278 GO:0003700|GO:0005634
Pumo1g00342 422 Gene3D - 139 179 IPR023278 GO:0003700|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00342 Pumo-Chr1 5062444 5063789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00342 8 419 EIL Transcription Factor Family AT5G10120 42.227 1.39e-104 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF EIL Pumo1g00342 EIN3 1.8e-59 No_clan