Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00124 ATGAAGAGGGATCACCAAGATAGCTGCGGCGGAGGTAGTGTGAAGGGTGAGTGCTCCTCAATGTCGAACGGGAAGGCGAAGATGTGGGAGGAAGAACAACAACCAGATGAGTACCTGGCGGCGGTGGGGTACAGGGTGCGTGCTTCCGACATGGCTGACATGGCACAGAAGCTGGAGCAGTTGGAGATGGTGATGGGGTGTGCCCCGGAAGAGGGAATTTCCCACCTTGCCTCCGATACCGTTCACTATGACCCAACGGATCTCTATTCCTGGGTCCAGAGCATGTTAACCGAACTCAACCCTCAACCCAACAACAACAACCTCGATCCATCTTCCCTCTTAATCGACGACAACAACAACAACAACATAATCAACAACACAGCCCCAGTTTTCAACGACGACTCCGAATATGACCTCAGAGCCATTCCTGGAATAGCAGCATACCCTCCTCCTCAAGACAACAACAACATCGACGAAATCGAAACCGGCAACAAGCGGCTCAAGCCTTCTCCTGTTGAATCACCAGAGTCCGCGTCTGAACCCACGCGCCCGGTGGTGCTCGTTGACTCGCAGGAAGCCGGTGTGCGTCTGGTCCACACTCTCCTGGCGTGCGCGGAGGCCGTTCAGCAGGAGAATCTGAAGCTGGCGGACGCGCTCGTGAAGCACGTGGGCATACTCGCGGCCTCGCAAGCCGGAGCCATGAGGAAGGTTGCGTCTTACTTCGCCCATGCCCTCGCGCGTAGAATCTACAGAATCTACCCTGAAGAAACCCTCGATTCCTCCTTCTCCGATGTTCTCCACATGCACTTCTACGAGTCATGCCCCTACCTCAAATTCGCCCACTTCACCGCGAATCAGGCCATTCTCGAAGCCTTCGCCACCGCCGGGAGTGTCCACGTCATCGATTTCGGCCTCAAACAAGGCATGCAGTGGCCGGCCCTCATGCAGGCCCTCGCATTGCGCCCCGGTGGGCCCCCCACCTTCCGTTTAACCGGAATCGGGCCCCCGCAGCCCGACAACACCGACGCGCTGCAGCAGGTGGGCTGGAAGCTGGCCCAATTAGCCCAAACCATCGGCGTTCAGTTCGAATTCCGCGGATTCGTATGCAACAGTTTAGCAGATCTCGACCCGAAGATGCTCGATATCCGACCCGGGGAAGCCGTCGCTGTTAACTCCGTTTTCGAACTCCACCGCATGCTGGCCCGACCCGGATCCGTCGACAAAGTCCTGGACACAGTCAAGAAAATTAAGCCCAAGATTGTTACCATCGTGGAACAAGAAGCGAACCACAACGGGCCGGGTTTTCTGGACCGGTTCACGGAGGCCTTGCATTATTACTCGAGTCTCTTCGACTCACTCGAGGGTTCGTCCTCTTCGACCGGGTTGGGCTCACCGAACCAGGATCTGTTAATGTCCGAGTTATACCTCGGGAGACAAATATGCAACGTGGTGGCTTACGAGGGCGCGGACCGGGTCGAGCGTCACGAGACTTTAACTCAGTGGAGAGGGAGATTGGGCTCGGCTGGGTTCGACCCGGTTCATCTCGGATCCAACGCGTTCAAGCAAGCGAGTATGTTGCTAGCTCTATTCGCAGGCGGTGACGGGTATAGGGTGGAGGAGAATAACGGGTGCCTCATGCTTGGGTGGCACACTAGGCCACTCATCGCTACCTCCGCGTGGAAGCTTCCCTCGCCGGCCGAGTCTTAG 1707 0.57 MKRDHQDSCGGGSVKGECSSMSNGKAKMWEEEQQPDEYLAAVGYRVRASDMADMAQKLEQLEMVMGCAPEEGISHLASDTVHYDPTDLYSWVQSMLTELNPQPNNNNLDPSSLLIDDNNNNNIINNTAPVFNDDSEYDLRAIPGIAAYPPPQDNNNIDEIETGNKRLKPSPVESPESASEPTRPVVLVDSQEAGVRLVHTLLACAEAVQQENLKLADALVKHVGILAASQAGAMRKVASYFAHALARRIYRIYPEETLDSSFSDVLHMHFYESCPYLKFAHFTANQAILEAFATAGSVHVIDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQPDNTDALQQVGWKLAQLAQTIGVQFEFRGFVCNSLADLDPKMLDIRPGEAVAVNSVFELHRMLARPGSVDKVLDTVKKIKPKIVTIVEQEANHNGPGFLDRFTEALHYYSSLFDSLEGSSSSTGLGSPNQDLLMSELYLGRQICNVVAYEGADRVERHETLTQWRGRLGSAGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWKLPSPAES 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00124 568 Gene3D - 35 99 IPR038088 -
Pumo1g00124 568 ProSiteProfiles GRAS family profile. 188 561 IPR005202 -
Pumo1g00124 568 MobiDBLite consensus disorder prediction 1 27 - -
Pumo1g00124 568 Pfam Transcriptional regulator DELLA protein N terminal 36 103 IPR021914 -
Pumo1g00124 568 Pfam GRAS domain family 197 561 IPR005202 -
Pumo1g00124 568 SMART DELLA_2 36 109 - -
Pumo1g00124 568 MobiDBLite consensus disorder prediction 148 182 - -
Pumo1g00124 568 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 155 557 IPR005202 -
Pumo1g00124 568 FunFam DELLA protein GAI 34 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00124 Pumo-Chr1 2185689 2188286 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00124 37 562 GRAS Transcription Factor Family AT3G03450 65.226 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pumo1g00124 GRAS 3.9e-138 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00124 1 2185689 2188286 Pumo1g00124 1 2185689 2188286 ECH
Pumo1g00124 1 2185689 2188286 Pumo11g01603 11 47329641 47332199 ECH