Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01603 ATGGATCCTCATTTCAAGTCCAATTTCATCAATGGTGTTAAACCCAACCAAGTGCCCAACACGGTTGTTGTAGAGGATCAGCTCCTTGACCCTGTAAATGGGATGGTGAAACCCTTTGAATTTGGATTCATGGATAACCCGTTTATTCTTCCACCTGATCCAAACGCTGCTCAAAAATCTTTTTCCTTGTCTACCGATGAAGACTCTACATTGGATGAGAATGAGATTGATTTTTCTGAAACTGTCCTACGCTACATAAATCAAATGCTTATGGAAGAGGACTTGGAGGCGAAGCCGTGTATGTTCCATGATTCCTTGGCTCTCCAAGCTGCTGAGAAATCATTCTATGAGGTCATTGGTGAGACATACCCTTCATCTTCTTCAATCAAAAACTATCACAACGTGGACAGCCCTGATGACAGTAGCTTCAGTGGTTATGGAAGCAGTGGTACAACAACTAGCACAAATAACTCATTTGAGTCGCACTGGAGTAATGTTGATCTTGCTGACTACAAGCCTTCCATACTGCAAACTACTTTTCCTACTGACTTTGTTTTCCAGGCCAGTTCAATCCAATCTTCCATGAACACCACGAGTAACTTCACTGTAACCAATAGTGAATTCTTGGCAAGTTCCGCGGCTGCATTTTTGGATCCAGGTTCAACAAACTTGTTTAGCAAGAGTGAGTCTGTACTGCAATTTGAGAGGGGTGTGGAGGAAGCCAATAAGTTCCTGCCTAAAGAGAATCCTTTGGTTATTGACTTGGAGAACCCCTCTTTTAGAATGGTTCCTCCCCAGCAGGTGGAAATTAAGGCCGAGAGAGATGAAATTTCTGCCGAGTCAAGAGGAAGGAAGAATCACGAGCGGGAAGATGAAGAAGCAGATTTACAAGATGGGAGAAGCAACAAGCAGTCAGCTGTGTACATTGATGACAGTGAGATATCAGAGTTGCTTGATAAGGTACTGCTGGGCACGAGGTGCAGAAATGAGCCAGCTCCTTCGTGTATTTGTTATGCAGACCTTCCTAATGGACCTTCCTTGGGTAAATTAGAAGAAACAAACAAGTCTGGTGGTGGGAAGAGCCGTGTTAAGAAACAAGGCAACAAGAAGGGAGTTGTGGATCTGAGGACATTGTTGATTCTATGTGCACAAGCTGTTTCTTCTGATGATCGCGTATCTGCTCAAGAGTTATTGAAGCAGATAAGGCAACATGCTTCTCCGCTGGGTGATGGGACTCAGAGGCTGGCCCATTGCTTTGCAAATGCCCTTGAAGCACGCAATAAGCAGCAGAATCCTGAGATAGTGAGATTTTTGGTCTAA 1320 0.4402 MDPHFKSNFINGVKPNQVPNTVVVEDQLLDPVNGMVKPFEFGFMDNPFILPPDPNAAQKSFSLSTDEDSTLDENEIDFSETVLRYINQMLMEEDLEAKPCMFHDSLALQAAEKSFYEVIGETYPSSSSIKNYHNVDSPDDSSFSGYGSSGTTTSTNNSFESHWSNVDLADYKPSILQTTFPTDFVFQASSIQSSMNTTSNFTVTNSEFLASSAAAFLDPGSTNLFSKSESVLQFERGVEEANKFLPKENPLVIDLENPSFRMVPPQQVEIKAERDEISAESRGRKNHEREDEEADLQDGRSNKQSAVYIDDSEISELLDKVLLGTRCRNEPAPSCICYADLPNGPSLGKLEETNKSGGGKSRVKKQGNKKGVVDLRTLLILCAQAVSSDDRVSAQELLKQIRQHASPLGDGTQRLAHCFANALEARNKQQNPEIVRFLV 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01603 439 MobiDBLite consensus disorder prediction 268 305 - -
Pumo11g01603 439 Pfam GRAS domain family 375 436 IPR005202 -
Pumo11g01603 439 MobiDBLite consensus disorder prediction 268 299 - -
Pumo11g01603 439 ProSiteProfiles GRAS family profile. 366 439 IPR005202 -
Pumo11g01603 439 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 269 427 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01603 Pumo-Chr11 47329641 47332199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01603 82 426 GRAS Transcription Factor Family AT1G07530 43.799 1.20e-73 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pumo11g01603 GRAS 1.5e-12 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01603 11 47329641 47332199 Pumo11g01603 11 47329641 47332199 ECH
Pumo1g00124 1 2185689 2188286 Pumo11g01603 11 47329641 47332199 ECH
Pumo4g03996 4 80604157 80612352 Pumo11g01603 11 47329641 47332199 PCT