Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01584 ATGGTTTTCTCCTCTATTCCAGTCTTTGTAGATCCTCCCAATTGGCAGCAGCAACCAAACCATCCTCAAGCAAATGGAAGTGATCATAACACTCAGCTTCTTCCACCTTTGCCACCACAGCAACCTCATGTGGGAGGTTCTGTGGGTTCAATCAGGCCAGGTTCCATGGCAGATCGAGCTAGGCTAGCTAAGATACCTCCTCCAGAAGCAGCACTCAAGTGTCCACGTTGCGAATCCACCAACACTAAATTTTGCTATTTCAACAACTACAGCCTCTCTCAGCCACGCCACTTCTGCAAGACTTGTAGGCGTTATTGGACAAGAGGGGGTGCTCTTAGAAACGTTCCTGTGGGTGGAGGGTGCCGTAGGAACAAGAAGAACAAAAGGAGTCGCTCTAAGTCTCCTGCATCATCAGAGAAACAAACACTTTCAGGTTCCACAAGTGCAATCCCCTCTGGTGGAACCACTCATGAACTAATTGGCCAGTTGCCACAACCACCAAATCTTCCCTTCATGGCTTCACTTCAGAACCTGAACCGTTATGCTGTTGGAAACATGGGTCTTGGGTTGCGTGAGATTCACGGACAGAACGAGCACATGGGGTTTCAAATTGGTGGTGGTGGTGGAGGAATGGATCAGTGGCGCTTGCAACAGGTTCCTTTCTTGAATGGTTTTGATCAATCAACTTCAGCTGCTTCATACCCTTTTCAAAATGAAAGTACTATTGAAACACCTTCTGGTTTTGGTGGAGATATAGCAATGAATTCTAGGGTTTCTCAGATGCCATCAGTTAAAATGGAAGAGAGTGGAGCTTTGAATTTGTCAAGATCATCACTGAATGTCTCAGAAAATAACCAATACTATTCATGGACTGATATGTCAGGTCTTGCTTCTTCTTCTTCCGCTAGTCATCTCTTGTAA 921 0.4571 MVFSSIPVFVDPPNWQQQPNHPQANGSDHNTQLLPPLPPQQPHVGGSVGSIRPGSMADRARLAKIPPPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPASSEKQTLSGSTSAIPSGGTTHELIGQLPQPPNLPFMASLQNLNRYAVGNMGLGLREIHGQNEHMGFQIGGGGGGMDQWRLQQVPFLNGFDQSTSAASYPFQNESTIETPSGFGGDIAMNSRVSQMPSVKMEESGALNLSRSSLNVSENNQYYSWTDMSGLASSSSASHLL 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01584 306 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 42 238 IPR045174 GO:0003700|GO:0006355
Pumo11g01584 306 MobiDBLite consensus disorder prediction 136 162 - -
Pumo11g01584 306 ProSitePatterns Zinc finger Dof-type signature. 74 110 IPR003851 GO:0003677|GO:0006355
Pumo11g01584 306 MobiDBLite consensus disorder prediction 116 165 - -
Pumo11g01584 306 MobiDBLite consensus disorder prediction 11 33 - -
Pumo11g01584 306 ProSiteProfiles Zinc finger Dof-type profile. 72 126 IPR003851 GO:0003677|GO:0006355
Pumo11g01584 306 Pfam Dof domain, zinc finger 71 126 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01584 Pumo-Chr11 47140890 47142795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01584 39 305 C2C2-Dof Transcription Factor Family AT3G55370 43.771 1.81e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo11g01584 zf-Dof 1.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01584 - - gmx:100816635 520.005