Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00564 ATGGATCCGACCAAGAAGCGCAAGCTCGACGAGAACGGCTTCAACAACAACGATTCCGACCCCCTCAAGCTCTCCCCCTCCGACGCCCGCAAGCTCATCGAGCGCTTCACCCCGGACCAGCTCCTCGACATCCTCCAGGACGCGGTGGCGCGCCACCCCGACGTCCTCGCCGCCGTGCGCGCCGTCGCCGACCCCGACGTCTCCCAGCGCAAGCTCTTCATCCGCGGCCTCGGCTGGGACACCACCACCGACGGCCTCCGCTCCCTCTTCTCCACCTTCGGCGACCTCGAGGAGGCCGTCGTGATCCTCGACAAGGCCACCGGCAAGTCCAAGGGCTACGGCTTCGTCACCTTCCGCCACGTCGACGGCGCCCTCCTCGCCCTCCGCGAGCCCAGCAAGCGCATCGACGGCCGCGTCACCGTCACGCAGCTCGCCGCCGCCGGGAACTCCGCCTCCAACGCCAACGCCGCCGACGTCGCGCTGCGGAAGATCTACGTCGCCAACGTGCCCCCGGACCTCCCCGCGGACAAGCTTCTTGCACACTTCTCTGTCTACGGCGAAATCGAGGAGGGACCGTTAGGGTTTGATAAACAGACCGGAAAATCGAAAGGGTTTGCTTTGTTTGTCTATAAGACCCCCGAAGGGGCTCAGGCTGCGTTAATAGATCCTGTTAAGACTGTGGAAGGTAGGCAGTTGAGTTGTAAGTTGGCGATTACTGATGGGAAGCAGGGGAAGCGGGCCGGGCCGGACTCGGCCCAGGCCCATGGGAATGTTCAGCATGGGCATGGGGATGGAGTGGGGGCGGGAATGGGGATGCCTCCCGCGGCCGGGTCTGGGCCCGGGCAGTATGGTGGGCCCGGGCAGTACGGGGGCCCGGTTGGGCTGGGCTCTTATGGTGGTTATGGTGGGCAGCCTCCGATGGGGAATCATAACCATCCTCTGAATTCGTCGAATCCGGTGCCGGGGTCTATGGCGGTTGCTGGTGGCTATGGTGGTGCTGGGATGGGTGGGCCCTATGGTGGGTACGGTGGCGGGCCGGGTTCGGCAGGCTTTGGTGGTGCTGGTGGGTTGGGAGGAGGTAGTGGAGGTGTTGGTGGTGGTGCAGGTGGTGGGCTTGGCGGCGCAGGTGGTGGACTTGGCAGTGCTGGTGGTGGTTCTTTGTATAGATTGCCGGGTTCGGGTGGAATGCCTGCTGGTGGTGGAGGGTATCCGGATAGTGGACACTATGGTCTATCAGCTTCATCTGGGTACCAGAATCAGCATCACCCTCCTTCTGGGGCTTCACCTGTGCCTAGGGTTCCGCCTGGTTCGATGTATCCCAACGTGCCCCCTTACTACTGA 1341 0.6361 MDPTKKRKLDENGFNNNDSDPLKLSPSDARKLIERFTPDQLLDILQDAVARHPDVLAAVRAVADPDVSQRKLFIRGLGWDTTTDGLRSLFSTFGDLEEAVVILDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSASNANAADVALRKIYVANVPPDLPADKLLAHFSVYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALIDPVKTVEGRQLSCKLAITDGKQGKRAGPDSAQAHGNVQHGHGDGVGAGMGMPPAAGSGPGQYGGPGQYGGPVGLGSYGGYGGQPPMGNHNHPLNSSNPVPGSMAVAGGYGGAGMGGPYGGYGGGPGSAGFGGAGGLGGGSGGVGGGAGGGLGGAGGGLGSAGGGSLYRLPGSGGMPAGGGGYPDSGHYGLSASSGYQNQHHPPSGASPVPRVPPGSMYPNVPPYY 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00564 446 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 221 IPR000504 GO:0003723
Pumo11g00564 446 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 139 IPR000504 GO:0003723
Pumo11g00564 446 MobiDBLite consensus disorder prediction 411 425 - -
Pumo11g00564 446 MobiDBLite consensus disorder prediction 427 446 - -
Pumo11g00564 446 FunFam UBP1-associated protein 2C isoform A 53 154 - -
Pumo11g00564 446 SUPERFAMILY RNA-binding domain, RBD 62 145 IPR035979 GO:0003676
Pumo11g00564 446 MobiDBLite consensus disorder prediction 399 446 - -
Pumo11g00564 446 Gene3D - 155 266 IPR012677 -
Pumo11g00564 446 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 239 IPR000504 GO:0003723
Pumo11g00564 446 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 147 IPR000504 GO:0003723
Pumo11g00564 446 SMART rrm1_1 163 235 IPR000504 GO:0003723
Pumo11g00564 446 SMART rrm1_1 71 143 IPR000504 GO:0003723
Pumo11g00564 446 MobiDBLite consensus disorder prediction 241 320 - -
Pumo11g00564 446 Gene3D - 46 154 IPR012677 -
Pumo11g00564 446 MobiDBLite consensus disorder prediction 1 25 - -
Pumo11g00564 446 FunFam UBP1-associated protein 2C isoform A 155 304 - -
Pumo11g00564 446 SUPERFAMILY RNA-binding domain, RBD 150 268 IPR035979 GO:0003676
Pumo11g00564 446 PANTHER GEO13361P1-RELATED 53 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00564 Pumo-Chr11 19922798 19927353 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00564 158 237 C2H2 Transcription Factor Family AT2G19380 40.000 9.04e-11 62.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g00564 11 19922798 19927353 Pumo11g00564 11 19922798 19927353 ECH