Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00522 ATGGCATCCCTCAAACAGTTTTCATCCCTATTACTATTCCCTCTGTTGCTCATTATTTCCCTCTTCATCAAGCCCTCCCACGCCGGAGGAATTGCCATCTATTGGGGTCAAAACGGCAACGAAGGCTCCCTGGCAGACGCATGCAACACCGGCAACTACAAATTCGTGAACATAGCATTCCTGTCCACATTCGGCAACGGCCAAACCCCGCAAATAAACCTCGCTGGCCACTGCGACCCCAGAATCAACGGCTGCACCAAATTCAGCAGCCAAATCAAGGCGTGCCAGGGCAAAGGCATCAAGGTCCTCCTCTCCCTCGGAGGCGCCGGTGGAAGCTACTCCCTCGTCTCCGCCAACGACGCAACACAGCTTGCAACCTATCTCTGGAACAACTTCCTCGGCGGACAGTCGAGCTCCCGCCCGCTGGGCGACGCCGTCCTGGACGGCATCGACTTCGACATCGAGGCCGGCGGCGGGGCCCATTACGACGAACTTGCAAAGGCACTCAACGGGTTCAGCTCACAGAAGAAGGTCTACCTGGCTGCAGCCCCACAGTGTCCATTCCCTGATTCTCACTTGGACTCAGCCATCAAAACCGGCCTCTTTGACTATGTGTGGGTCCAGTTCTACAACAACCCTCGTGCTGCTTGCCAGTACTCCAGTGGCAACACCAAGGATCTCATCAATTCTTGGAACCGATGGACCTCAAGCCAGGCCAAGCAAGTGTTCTTGGGACTGCCAGCTTCTACTGCTGCTGCTGGGAGTGGCTTTATTCCCGCTAATGTGTTGACCTCCCAGGTTCTTCCTGCTATCAAGGGCTCTGCCAAGTATGGTGGAGTCATGCTTTGGAACAGATTCTTTGATGTTCAAAATGGATACAGTGGTGCTATTAAGGGCAGTGTTTAA 906 0.543 MASLKQFSSLLLFPLLLIISLFIKPSHAGGIAIYWGQNGNEGSLADACNTGNYKFVNIAFLSTFGNGQTPQINLAGHCDPRINGCTKFSSQIKACQGKGIKVLLSLGGAGGSYSLVSANDATQLATYLWNNFLGGQSSSRPLGDAVLDGIDFDIEAGGGAHYDELAKALNGFSSQKKVYLAAAPQCPFPDSHLDSAIKTGLFDYVWVQFYNNPRAACQYSSGNTKDLINSWNRWTSSQAKQVFLGLPASTAAAGSGFIPANVLTSQVLPAIKGSAKYGGVMLWNRFFDVQNGYSGAIKGSV 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00522 301 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 147 155 IPR001579 GO:0004553|GO:0005975
Pumo11g00522 301 FunFam Acidic endochitinase SE2 29 301 - -
Pumo11g00522 301 Pfam Glycosyl hydrolases family 18 31 255 IPR001223 GO:0005975
Pumo11g00522 301 CDD GH18_hevamine_XipI_class_III 29 299 IPR045321 -
Pumo11g00522 301 Gene3D Glycosidases 29 301 - -
Pumo11g00522 301 PANTHER ENDOCHITINASE 11 298 - -
Pumo11g00522 301 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 29 301 IPR001223 GO:0005975
Pumo11g00522 301 SUPERFAMILY (Trans)glycosidases 25 297 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00522 Pumo-Chr11 18696105 18697144 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00522 11 301 Glycoside Hydrolase AT5G24090 62.034 6.33e-132 375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g00522 11 18696105 18697144 Pumo3g01090 3 17398685 17399686 ECH
Pumo11g00522 11 18696105 18697144 Pumo11g00522 11 18696105 18697144 ECH