Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00484 ATGAGGAACAAACTTCCACAACCTTTGTGTCTTTTGTTTTTTATTTCACTAACCTTGTTTTCAAAATCAAATGCAGGAAGCCTTGTGGTTTACTGGGGACAGAATGCAGGTGAAGGCAGTTTGACAGACACATGCAAAAGTGGACTCTTCCAAATTGTGAACATAGCATTCCTCTATTCTTTTGGCAGTGGTCGTCAACCTCAAATCAATCTAGCAGGCCATTGTCCCGCTGAATCAAACGGTTGCCAAAGGGTAGGCGTAGGCGTCAAGAACTGCCAAAGCAGAGGCATTAAGGTTATGCTTTCAATTGGGGGTGACACCAACACCTACTCATTGTCATCCCCAGATGATGCCAGACAAGTAGCAGACTACATCTGGAACAACTTCTTGGGAGGGAGCTCAAACTCTAGGCCATTTGGGGATGCCATATTGGATGGGGTGGATTTTGACATTGAAAAAGGTGGTGAGGCCCACTATCCAGCACTTGCTAACAGGCTGCATGACCATTATGCTGGCTCAAGAAAAAAGTTCTACCTAACTGCTGCACCACAATGTCCATTCCAAAACAACATACTCCATGGGGCACTCACCACAGGCCTCTTTGACCATGTTTGGATTCAGTTCTACAACAATCCTCAGTGTGAGTTTACCTCAAACAACCCCAGTGGGTTTAAGAGTGCATGGAACCAGTGGACCACCTCAATTAATGCTGGCAAGTTCTTTGTTGGGCTCCCTGCCTCACAAACAGCAGCTGGGAGTGGCTTTGTGCCATCACAAACTCTCATAAACCAATTGCTGCCTATTGTTCGGTCACCTAAATATGGAGGTGTCATGCTCTGGGATAGGTTCCACGATGTGCAGTCTGGATATAGTGGCAAAATTAGTGGAAGCGTTTGA 897 0.4593 MRNKLPQPLCLLFFISLTLFSKSNAGSLVVYWGQNAGEGSLTDTCKSGLFQIVNIAFLYSFGSGRQPQINLAGHCPAESNGCQRVGVGVKNCQSRGIKVMLSIGGDTNTYSLSSPDDARQVADYIWNNFLGGSSNSRPFGDAILDGVDFDIEKGGEAHYPALANRLHDHYAGSRKKFYLTAAPQCPFQNNILHGALTTGLFDHVWIQFYNNPQCEFTSNNPSGFKSAWNQWTTSINAGKFFVGLPASQTAAGSGFVPSQTLINQLLPIVRSPKYGGVMLWDRFHDVQSGYSGKISGSV 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00484 298 Gene3D Glycosidases 26 297 - -
Pumo11g00484 298 CDD GH18_hevamine_XipI_class_III 26 294 IPR045321 -
Pumo11g00484 298 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 144 152 IPR001579 GO:0004553|GO:0005975
Pumo11g00484 298 Pfam Glycosyl hydrolases family 18 28 284 IPR001223 GO:0005975
Pumo11g00484 298 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 298 IPR001223 GO:0005975
Pumo11g00484 298 FunFam Acidic endochitinase SE2 26 298 - -
Pumo11g00484 298 SUPERFAMILY (Trans)glycosidases 23 294 IPR017853 -
Pumo11g00484 298 PANTHER ENDOCHITINASE 14 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00484 Pumo-Chr11 17696207 17698718 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00484 11 298 Glycoside Hydrolase AT5G24090 53.608 5.31e-111 322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g00484 11 17696207 17698718 Pumo11g00484 11 17696207 17698718 ECH