Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00150 ATGTATGCAAAGTTGAAGTCCACTCTGCCCGACAAACCTGACCTTCTGTTGTGTATTCTTCCGGAGAAAAAGAATTGTGATATTTATGGTCCTTGGAAGAAGAGAAGTCTTGTTGAGGAAGGGGTTGTAACCCAATGTATTGCACCAACCAAAATTAATGATCAGTACATTACTAATGTACTCCTGAAAATTAATGCAAAGTTTGGAGGGATGAATTCCTATCTGTCAATAGAGCGTTATAGTTCCATTCCTTTTGTTTCTGCTGTGCCTACCTTAATTCTTGGAATGGACGTTTCTCATGGATCTCCTGGTCGATCAGATGTGCCCTCTATTGCTGCGGTTGTGAGCTCAAGATGTTGGCCTCAAATTTCACGTTATAGAGCTACAGTTCGCACACAATCATCAAAAGTTGAGATGATTCAATCTCTATTCAAGCCTGTGCCTAATACTAATGAGGATGAGGGTATCATCAGGGAGGTGCTATTAGACTTTGAAAAAACTTCAGGAAAAAGGAAGCCTCAACAAATTATAATTTTCAGGGACGGAGTGAGTGAATCACAGTTCAACCAAGTGCTCAACAATGAGTTTAGTCAAATCATTGAGGCATGCAAACACCTTGATGAAAGGTGGGATCCAAAATTCACTCTGATTATTGCCCAGAAGAATCATCATACTAGATTCTTCCAGGCCAATGCTCGAGAAAATGTTCCACCCGGAACCGTTATTGACAACACAATCTGTCATCCAAAAAACAATGACTTCTACTTGTGTGCTCAAGCTGGGATGATTGGGACAACTCGACCTACTCACTACCATGTTTTACACGATGAAATCGGGTTCTCAGCTGATGAAGTGCAGGAATTAGTGCATTCTCTATCTTATACGTACCAGAGGAGCACAACTGCTGTATCATTAGTTGCTCCCATTTGTTATGCCCACTTGGCAGCTGCTCAGATGGCACAATTTGTGAAGTTTGATGAACATTCTGAGACTTCTTCCAGCCATGGTGGAGTCACATCTGCTAGTGCACCTCTAGTACCTCAATTACCACGTCTTCACAAACAAGTCATCAACTCCATGTTCTTTTGTTAA 1092 0.4139 MYAKLKSTLPDKPDLLLCILPEKKNCDIYGPWKKRSLVEEGVVTQCIAPTKINDQYITNVLLKINAKFGGMNSYLSIERYSSIPFVSAVPTLILGMDVSHGSPGRSDVPSIAAVVSSRCWPQISRYRATVRTQSSKVEMIQSLFKPVPNTNEDEGIIREVLLDFEKTSGKRKPQQIIIFRDGVSESQFNQVLNNEFSQIIEACKHLDERWDPKFTLIIAQKNHHTRFFQANARENVPPGTVIDNTICHPKNNDFYLCAQAGMIGTTRPTHYHVLHDEIGFSADEVQELVHSLSYTYQRSTTAVSLVAPICYAHLAAAQMAQFVKFDEHSETSSSHGGVTSASAPLVPQLPRLHKQVINSMFFC 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00150 363 SMART Piwi_a_2 15 324 IPR003165 GO:0003676
Pumo11g00150 363 SUPERFAMILY Ribonuclease H-like 4 322 IPR012337 -
Pumo11g00150 363 FunFam Protein argonaute 3 83 363 - -
Pumo11g00150 363 ProSiteProfiles Piwi domain profile. 15 324 IPR003165 GO:0003676
Pumo11g00150 363 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 3 326 - -
Pumo11g00150 363 Gene3D - 82 363 IPR036397 GO:0003676
Pumo11g00150 363 Gene3D - 1 80 - -
Pumo11g00150 363 Pfam Piwi domain 16 324 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00150 Pumo-Chr11 3776844 3780385 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00150 14 363 Eukaryotic Initiation Factors Gene Family AT5G43810 44.173 2.77e-89 286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03348 4 70805600 70811143 Pumo11g00150 11 3776844 3780385 ECH
Pumo11g00150 11 3776844 3780385 Pumo11g00150 11 3776844 3780385 ECH