Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02872 ATGAACATGTTAGGCCTTAGAGACCTAGTTCTCATAGCTCCAACCCCTTCTCCACTTCACCACCATCAACACCAACATCAACACCAACACCAACCCATTTCAGCAGAACACCATAATTCCAATCTCCCTTTGCCTTCTCCAGCCTCTCTCAGCGTTGGTCTTGGCATTTTCCCTCTCCTAACAGTGCCACACACCAATGATGTTCATGTTCAAGTTCAACAAGATTGTGCCAACAACAACAACACTAACACCAACACCACCAACTACACCAACTATTGGAACCTCAAGATGTGTGGTGCCACTGAAGTGAATTCCACAAGAAAAGGTGTCATGAACATGGAGGATGAGGGGAGCAACAAGCACGTGATGGAGAGTGAGGAGAGTGGTGGCGAGTTCAGGGTGTGCCAGGATTGTGGCAATAGGGCCAAGAGAGATTGCAGCTTCAGAAGGTGCAGGACTTGTTGCAAGGGACGTGGCTTTGATTGCAGCACTCACGTGAAGAGCACGTGGGTCCCCGCGTCTGTGAGACGCGGGAGTAGTAGTGGTGGTGATGGTAATGGTGACGGTGATGGCGGGGATGGTGGTGCTTCTAAGAGGCTAAGAACTTTGGGATCATCAAAGAATGTTGCTGCTACCTCTCACAGTTCCACTTCCAATGCTACCCGAGATACCAGCTCTTGTCAACAAGATGCTGGTTTCAAGCAGTCTTTGCCACGCCATGTTCGTGCCCCTGCTGTTTTTAGGTGCCATAGAGTGTCTGCTATTGGGAGTGGTGAAGATGAGATTGCTTACTTGGCCACAGTTCATATTAGTGGCCATGTGTTCAAGGGGTTTCTGTATGATCATGGTGCTGATGCCAGAAATGATGTGCCTAGTGTCTCAGAACTGCAACTGGGAAACAATGGAAGTGGAAAGAATACCAATAGGGAATGCTCTTCTGCAATTGGGGTTCCAACTAGTGTTTACCCTGCTTCTGTTTGCTGA 984 0.4868 MNMLGLRDLVLIAPTPSPLHHHQHQHQHQHQPISAEHHNSNLPLPSPASLSVGLGIFPLLTVPHTNDVHVQVQQDCANNNNTNTNTTNYTNYWNLKMCGATEVNSTRKGVMNMEDEGSNKHVMESEESGGEFRVCQDCGNRAKRDCSFRRCRTCCKGRGFDCSTHVKSTWVPASVRRGSSSGGDGNGDGDGGDGGASKRLRTLGSSKNVAATSHSSTSNATRDTSSCQQDAGFKQSLPRHVRAPAVFRCHRVSAIGSGEDEIAYLATVHISGHVFKGFLYDHGADARNDVPSVSELQLGNNGSGKNTNRECSSAIGVPTSVYPASVC 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02872 327 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 22 313 IPR007818 GO:0003700|GO:0006355
Pumo10g02872 327 Pfam Domain of unknown function (DUF702) 134 285 - -
Pumo10g02872 327 NCBIfam putative zinc finger domain, LRP1 type 134 175 IPR006510 -
Pumo10g02872 327 MobiDBLite consensus disorder prediction 16 46 - -
Pumo10g02872 327 MobiDBLite consensus disorder prediction 201 231 - -
Pumo10g02872 327 MobiDBLite consensus disorder prediction 173 231 - -
Pumo10g02872 327 NCBIfam LRP1 C-terminal domain 237 283 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02872 Pumo-Chr10 57609365 57615036 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pumo10g02872 DUF702 9.9e-52 No_clan