Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02836 ATGGTGGCTAAACCGGGTTCGGTTCCGGACTTCGAGGCGCTGCGAGAGCTCTTCAAGCATCACACAGAGTCCTTCGATTACATGGTCGATGCTGGATTGGAAACCATGCTCCGACACATCAAACCCGTCGAAGTTGTCGACGATTTCACTTCCACAAAGCTTAGAATTTGGTTGGATAATCCGGTGCTATATCCACCGCAGAAGGAGCGGTTTTCGAGGACAATGCGGGAGGCTTTACTTCCGTTTGAATGTAGACAGGCAAAGATTTCATACGCAGGGAAGATTACTATAGATGTTTGCTTTCAATATAATGATGGGCCTATTATTAGAGAAAATTTAAATTTTGGGCAGTTTCCCATAATGCTGCAGTCAAAGTTATGCAACTTGAGAGGTGCTGATCCCCAGAAACTTGTGTCCTACAAGGAAGAAGCATCGGAAATGGGTGGTTACTTCATCTTGAATGGCCTTGAGAGAGTTATCCGACTGTTAATTATGCCAAAACGGAATTATCCAATGAGTACAGTGCGGAGTTCATTTAGTGACCGGCGGGAAGGATATACAGATAAAGCCGTTGTAATAAGGTGTGTAAGAGCTGATCAGTCCTCATTATCAATAAAATTGTATTACCTTCGTAATGGGAGTGCAAGACTTGGTTTCTGGTTAAGAGGAAGGGAGTACTTGCTTCCTGTGGGCATTGTTTTGAAGGCCCTCATTGACACAACTGACCGTGAAATTTATGTAAATTTGACAAGCTGCTATAATGAGAAGTATGAAAAGGGAAAGGGTGCTGTTGGGACCCAGCTTGTTGGTGAAAGGGCAAAAATAATCTTAGACGAACTTCGAGATTTGTCTCTTTTCACTCGCCTTCAATGTCTAGAATATATTGGAGAGCACTTCCAACCTATTTTGACTGAACTTAAGAATGACAGTTATCCTATTGTGGCTGATGCTGTTTTGAAGGACTGCATATTAGTTCATCTGGATAACAATTTTGACAAGTTCAATCTTCTCATCTTCATGTTGCAGAAACTTTTCTCACTTATAGATCAGACATCGGTGCCGGACAACCCTGATTCCTTGCAAAATCATGAGGTTTTACTCCCTGGCCACCTGATTACACTTTATCTCAAGGAAAAACTGGAAGATTGGCTGCAAAAGGGAAGAAGGCTTCTTCTGGATGAGATTGATAAAAAAAGCAAGAAATTTGATTTCAGTGACATTTTTCAAGTTAAGAAAGTCATGGATAAAAATTCACCAAAGCAAGTCAGTACAGCAGTTGAAAATATGTTGAAAACTGGAAGATTGGTTACACAAACGGGTCTAGATCTGCAGCAGAGGGCAGGTTATACAGTTCAGGCTGAAAGGCTAAATTTTTTACGTTTTCTATCACATTTTCGTGCTGTTCATCGAGGGGCCTCATTTGCTGGACTTCGTACCACAACTGTGCGGAAGCTGTTACCTGAATCTTGGGGTTTTCTTTGCCCTGTGCACACACCTGATGGAGAGCCCTGTGGATTGTTGAATCATATGACTTGCACTAGTAGGATAACGTCATTCTTTGATTCTCAAGGAAACATTAAAGATTATTTTAAAATAAAAATGTCCATCCTAAATGTTCTATTGGAGGTTGGGATGACACCATCATTGCCAAAGATATTTCTTCCTGGTCCACCTGAAGCTCTTACTGTTCTCTTAGATGGTTGTGTTGTTGGTTGTATAGCTTCCAGTGAAGTGGAGAAAGTTGTGGCTCACATACGAGAATTAAAAGTGTCATCTGCTGCAGTGATTCCTGATGATATGGAAGTGGGATATGTTCCTTTGAGCATGGGTGGTGCCTATCCTGGTCTCTACCTGTGCACATCCCCTTCAAGATTTGTTCGGCCAGTAAGAAATATATCAATTCCTTCCAATGGAAGTGAAAACATTGAACTCATTGGGCCATTTGAGCAGGTTTTTATGGAAATTAAATGTCCTGATGGCGGAGATGGTGGAAGAAAAAGTTCATTTCCTGCAACTCATGAAGAAATTCATCCAACAGGAATGCTTAGTGTAGTTGCTAATCTCACACCATGGTCAGATCATAATCAGAGTCCACGAAATATGTACCAGTGTCAGATGGCAAAGCAAACAATGGCATTTTCTTCACAAACTATTCAACATCGTGCAGATCAAAAGTTATATCATCTTCAGACTCCTCAGACTCCCATTGTACGCACGAGTACATATGCTAAATACAACATTGATGAATTTCCAACAGGCACAAATGCTATAGTTGCAGTTCTGGCATATACAGGATATGATATGGAGGATGCCATGATTCTAAATAAGTCATCAGTGGAGCGTGGAATGTTTCATGGACAAATATATCAGACAGAAACTATTGACTTGACTGAACAAGGGGGAAGGTCAGATCAATCTTCAAGAATTTTCAGAAAAAGTAATATAGAGAAAACAGCTTGTCCCTCGATTGATTCAGATGGACTTCCACACGTTGGTCAGATGATACGGCCAGATGAACCCTATTGTAGCATTTATAATGAAGTAACAAGTTCTACACACACCATCAAAAGAAAGGGTTCTGAAGCTGTTTATGTTGACTATGTTGCTGTTGATGTCAAAAACAAGAAGCACCTTCAGAAGGTTAATATACGCTTTCGACATCCTCGGAACCCTGTTATTGGTGATAAATTTAGCAGTAGACATGGGCAGAAAGGCGTTTGCTCTCAGTTGTGGCCAGATATTGATATGCCATTTTCTGGAACTACTGGGATGCGCCCAGATCTCATTATCAATCCTCATGCATTTCCTTCCAGGATGACAATTGCTATGCTTTTGGAATCTGTTGCTGCTAAGGGAGGTAGCTTACGTGGAGAATTTGTAGATGCAACTCCATTTCGAAGTTCAATGAAGAAAGACAGTGGGGAGTCTGATTCAAAATCAGGTTCACTTGTCGATGATCTTGGCCTTCTACTAAGAGAAAAGGGATTTAATTATCACGGTTTGGAGGTTCTATACAGTGGTGTTTATGGAACAGAACTAACGTGTGAGATATTTATTGGACCTGTTTATTATCAGCGGCTGCGTCACATGGTTTCAGACAAATTTCAGGTTCGATCTACTGGCACAATTGACCAGGTCACCCGGCAGCCAATAAAAGGACGGAAGCGTGGTGGGGGAATTCGATTTGGTGAAATGGAACGCGACTCTCTGCTTGCACATGGAGCTGCGTATCTTCTGCATGACAGGTTGCACACCTGTTCTGATTATCACATTGCTGATGTATGTTCACTTTGTGGAAGCATGCTTACAACAACATTCATCCAACCTCAAAAGCGGCCGGTTCGGGAGATTGGTGGGCTACCCCCTGGAAGAGCTCCGAAAAAGGTCACTTGTCATGCTTGCCAAACGAGTAAGGGCATGGAGACAGTCGCCATGCCCTATGTATTTAGATATTTGGCTGCTGAGTTAGCAGCAATGAATATAAAAATGACTCTTAAGCTCAGTGACGGAGCCGGAGCCGGAGCTGGAGCCTGA 3534 0.4202 MVAKPGSVPDFEALRELFKHHTESFDYMVDAGLETMLRHIKPVEVVDDFTSTKLRIWLDNPVLYPPQKERFSRTMREALLPFECRQAKISYAGKITIDVCFQYNDGPIIRENLNFGQFPIMLQSKLCNLRGADPQKLVSYKEEASEMGGYFILNGLERVIRLLIMPKRNYPMSTVRSSFSDRREGYTDKAVVIRCVRADQSSLSIKLYYLRNGSARLGFWLRGREYLLPVGIVLKALIDTTDREIYVNLTSCYNEKYEKGKGAVGTQLVGERAKIILDELRDLSLFTRLQCLEYIGEHFQPILTELKNDSYPIVADAVLKDCILVHLDNNFDKFNLLIFMLQKLFSLIDQTSVPDNPDSLQNHEVLLPGHLITLYLKEKLEDWLQKGRRLLLDEIDKKSKKFDFSDIFQVKKVMDKNSPKQVSTAVENMLKTGRLVTQTGLDLQQRAGYTVQAERLNFLRFLSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHMTCTSRITSFFDSQGNIKDYFKIKMSILNVLLEVGMTPSLPKIFLPGPPEALTVLLDGCVVGCIASSEVEKVVAHIRELKVSSAAVIPDDMEVGYVPLSMGGAYPGLYLCTSPSRFVRPVRNISIPSNGSENIELIGPFEQVFMEIKCPDGGDGGRKSSFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSSQTIQHRADQKLYHLQTPQTPIVRTSTYAKYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLTEQGGRSDQSSRIFRKSNIEKTACPSIDSDGLPHVGQMIRPDEPYCSIYNEVTSSTHTIKRKGSEAVYVDYVAVDVKNKKHLQKVNIRFRHPRNPVIGDKFSSRHGQKGVCSQLWPDIDMPFSGTTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLRGEFVDATPFRSSMKKDSGESDSKSGSLVDDLGLLLREKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTIDQVTRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHIADVCSLCGSMLTTTFIQPQKRPVREIGGLPPGRAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKMTLKLSDGAGAGAGA 1177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02836 1177 FunFam DNA-directed RNA polymerase subunit beta 171 354 - -
Pumo10g02836 1177 Pfam RNA polymerase I, Rpa2 specific domain 570 627 IPR009674 GO:0003899|GO:0005634|GO:0006351
Pumo10g02836 1177 Pfam RNA polymerase Rpb2, domain 7 1058 1166 IPR007641 GO:0003677|GO:0003899|GO:0006351
Pumo10g02836 1177 FunFam DNA-directed RNA polymerase subunit beta 10 170 - -
Pumo10g02836 1177 Gene3D - 9 170 - -
Pumo10g02836 1177 Gene3D - 352 545 - -
Pumo10g02836 1177 FunFam DNA-directed RNA polymerase subunit beta 686 785 - -
Pumo10g02836 1177 FunFam DNA-directed RNA polymerase subunit beta 881 1042 - -
Pumo10g02836 1177 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 8 1169 - -
Pumo10g02836 1177 CDD RNA_pol_B_RPB2 17 1166 IPR015712 GO:0003899|GO:0006351|GO:0032549
Pumo10g02836 1177 ProSitePatterns RNA polymerases beta chain signature. 894 906 IPR007121 GO:0003677|GO:0003899|GO:0006351
Pumo10g02836 1177 Gene3D - 686 1041 IPR037033 GO:0003677|GO:0003899|GO:0006351
Pumo10g02836 1177 FunFam DNA-directed RNA polymerase subunit beta 352 548 - -
Pumo10g02836 1177 Pfam RNA polymerase beta subunit 17 412 IPR007644 GO:0003677|GO:0003899|GO:0006351
Pumo10g02836 1177 Pfam RNA polymerase Rpb2, domain 6 685 1056 IPR007120 GO:0003677|GO:0003899|GO:0006351
Pumo10g02836 1177 FunFam DNA-directed RNA polymerase subunit beta 1043 1168 - -
Pumo10g02836 1177 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 8 1163 IPR015712 GO:0003899|GO:0006351|GO:0032549
Pumo10g02836 1177 Pfam RNA polymerase Rpb2, domain 3 453 516 IPR007645 GO:0003677|GO:0003899|GO:0006351
Pumo10g02836 1177 Gene3D RNA polymerase Rpb2, domain 2 171 351 IPR037034 GO:0003677|GO:0003899|GO:0006351
Pumo10g02836 1177 Pfam RNA polymerase Rpb2, domain 2 187 365 IPR007642 GO:0003677|GO:0003899|GO:0006351
Pumo10g02836 1177 Gene3D RNA polymerase alpha subunit dimerisation domain 1043 1169 - -
Pumo10g02836 1177 Gene3D - 716 890 IPR014724 GO:0003899
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02836 Pumo-Chr10 56501274 56524775 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g02836 10 56501274 56524775 Pumo10g02836 10 56501274 56524775 ECH