Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02834 ATGGACAATATATGGGCCGAACAACGAAGATTGGAAGCACTGAAGTTATACTACAGGGTATTGGAAGCAATGTGCAGAGCAGAAGCCCAAGTACTTCATGCAACTAATTTAACCTCTCTACTTACCAATGAGAGGTTCCATCGGTGTATGCTTGCATGTTCTGCAGAACTAGTCCTGGCAACTCACAAGACTGTAACAATGTTGTTCCCTGCAGTACTGGAGAGGACTGGAATTACAGCCTTTGATCTTAGCAAGGTGATCGAAAGCTTCATTAGACATGAAGAATCTCTACCAAGAGAATTGAGGCGACATCTGAATTCGTTGGAAGAACGACTTTTGGAGAGCATGGTATGGGAAAAGGGTTCTTCAATGTATAACTCTTTGGCTGTTGCCAGACCTTCCCTTTCTGCAGAGATAAATCGTCTTGGACTGTTAGCTGAACCAATGCCATCATTGGATGAAATTGCAATGCATATTAACTTCTCTTGTGGAGGGCTGCCGCCAGTGCCTATCTTGCCCAAGCTTGAAAGTTCACCAACTCAGAATGGGGATATCAGATCACCAAAGCGAAATGTTTTAATGGAAAGAAATTCTTTCACTTCACCAGTGAAAGATCGGCTTCTTCCCTTCAGCCCCCTTAAGTCAAAATTACCCCCACCTCCTTTGCAGTCAGCATTTGCCAGCCCAACAAAGCCAAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAACTGGGATCAACATCTTTTTTGGCAAGATCATTAAGTTGGGAGCAGTCAGAATAAGTGGCATGGTTGAAAGGCTACAATTATCTCAGCAGATAAGGGAGAATGTATACTGTCTTTTCCAGCGGATCCTAAATCAATGGACATCTCTCTTTTTCAACCGTCATATTGACCAAATCATCTTGTGTTGTTTCTATGGAGTTTCCAAGATTTCACAACTGAACCTAACTTTTAAGGAGATTGTATACAACTACAGAAAGCAACCACATTGCAAACCACAAGTTTTTCGTAGTGTATTTGTTGATTGGTCGTTGGCACGCCGAAATGGGAGAACAGGACAGGATCATGTTGACATCATTACCTTTTACAATGAAATATTCATTCCTTCTGTAAAGCCACTGCTGGTTGAACTTGGCCCTGCTGGACCAACTACAAAAAGCGATCGAATACCTGAAGTTAATAATAAAAATGATGGCCATTTAGCTCAATGTCCAGGGTCTCCTAAAATATCATCTTTCCCAACCCTTCCTGATATGTCTCCAAAAAAAGTGTCAGCCACACACAACGTATATGTCTCTCCGCTACGATCGTCCAAGATGGAGGCTCTAATATCACACAGCTCAAAAAGCTATTATGCATGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCTTCAAAAGACCTGACAGCCATCAATAACCGTTTGAATGGCAACCGGAAGGTGAGAGGTCCCCTCAATTTTGATGATGTTGATGTGGGCTTGGTCAGTGACTCTATGGTTGCAAACAGCCTCTATCTGCAGAATGGAAGTTGTGCATCATCATCAGGTGCACCATTGAAATCAGAGCAACCTGACTCCTGA 1587 0.431 MDNIWAEQRRLEALKLYYRVLEAMCRAEAQVLHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPSLSAEINRLGLLAEPMPSLDEIAMHINFSCGGLPPVPILPKLESSPTQNGDIRSPKRNVLMERNSFTSPVKDRLLPFSPLKSKLPPPPLQSAFASPTKPNPGGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYCLFQRILNQWTSLFFNRHIDQIILCCFYGVSKISQLNLTFKEIVYNYRKQPHCKPQVFRSVFVDWSLARRNGRTGQDHVDIITFYNEIFIPSVKPLLVELGPAGPTTKSDRIPEVNNKNDGHLAQCPGSPKISSFPTLPDMSPKKVSATHNVYVSPLRSSKMEALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGAPLKSEQPDS 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02834 528 FunFam Retinoblastoma-related protein 1 196 409 - -
Pumo10g02834 528 Gene3D - 202 396 - -
Pumo10g02834 528 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 1 526 IPR028309 GO:0006357|GO:0051726
Pumo10g02834 528 Gene3D - 1 118 - -
Pumo10g02834 528 SUPERFAMILY Cyclin-like 244 385 IPR036915 -
Pumo10g02834 528 Pfam Retinoblastoma-associated protein B domain 246 373 IPR002719 GO:0005634|GO:0051726
Pumo10g02834 528 SMART RB_A_2 1 128 IPR002720 GO:0005634|GO:0051726
Pumo10g02834 528 Pfam Retinoblastoma-associated protein A domain 3 128 IPR002720 GO:0005634|GO:0051726
Pumo10g02834 528 SUPERFAMILY Cyclin-like 4 130 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02834 Pumo-Chr10 56468485 56471426 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Pumo10g02834 RB_B 4.8e-40 CL0065