Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02792 ATGAGGAAGAAGCTCGATACCCGTTTCCCTGCTGCTCGGATAAAGAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTGGCTGTGCCTGTTTTAGTTTCTAAAGCTCTAGAACTATTTTTGCAAGATCTTTGTGACCGCACTTATGAAATAACTCTTCAAAGAGGAGCAAAGACCATGAATTCATTGCATTTAAAACATTGTGTACAAAGCTATAATGTCTTTGACTTTCTGAGGGACGTTGTCAGCAGGGTTCCTGACTACGGCCATGGCCATGGCCATGCTGAGGCTGGTGCTGATGATCGGGCCATTACAAAAAGAAGGAAAGCTGTTGGTGATGATTGTAATGACAGTGATGAAGAGGCTAAGAGGAGCAAGATGCATGAGTTGGGCCACACTGCCAGTACTGGTAGGGGAAGAGGCCGAGGTAGAGGAAGAGGCCGTGGCCGAGGGCGACCACCTATAAATAGAGAGACATATCATCAGGATGCTGAATCTGAGCCTTGCACTTCTGTTCAGCCGAGCAACCAACAAAATACAAACACAAGTGTTGCAATGGATAGTGGTTCCGAGTCAAAGGAGATACCAAAAGAGGAGAATATTGCAGTTCCTGTTGAAAGCACTGATTCACTCCGGAACATCGATCTGAATGCCACCACGAATGAAAACGATGACAAAAAGGCTGGCATAGCAGCTGATGCCTCAGTGCCTGAACCTGATGCCTCATTGCCTGAACCTGATGCCTCATTGCCTCAACCTCCAACAGAGAGCAAGCATGAAGAAATTAGCAAGCATGAAGAAATTCCAGGGTGGTCGCTTTCTGATGTGGACAAGATGGCCATTGATTCACTGCAGCTTGCACAACTTGGTAGGCCACTAGAAGAGGAGGAGGAAGACTATGATGAAGAGGAGGGGTAA 924 0.4654 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDVVSRVPDYGHGHGHAEAGADDRAITKRRKAVGDDCNDSDEEAKRSKMHELGHTASTGRGRGRGRGRGRGRGRPPINRETYHQDAESEPCTSVQPSNQQNTNTSVAMDSGSESKEIPKEENIAVPVESTDSLRNIDLNATTNENDDKKAGIAADASVPEPDASLPEPDASLPQPPTESKHEEISKHEEIPGWSLSDVDKMAIDSLQLAQLGRPLEEEEEDYDEEEG 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02792 307 SUPERFAMILY Histone-fold 4 96 IPR009072 GO:0046982
Pumo10g02792 307 FunFam dr1-associated corepressor homolog 1 86 - -
Pumo10g02792 307 MobiDBLite consensus disorder prediction 167 191 - -
Pumo10g02792 307 MobiDBLite consensus disorder prediction 112 277 - -
Pumo10g02792 307 MobiDBLite consensus disorder prediction 288 307 - -
Pumo10g02792 307 MobiDBLite consensus disorder prediction 259 274 - -
Pumo10g02792 307 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Pumo10g02792 307 MobiDBLite consensus disorder prediction 112 137 - -
Pumo10g02792 307 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Pumo10g02792 307 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02792 Pumo-Chr10 54915024 54923098 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02792 1 293 CCAAT-HAP5 Transcription Factor Family AT3G12480 49.338 5.32e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pumo10g02792 CBFD_NFYB_HMF 2.4e-19 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g02792 10 54915024 54923098 Pumo10g02792 10 54915024 54923098 ECH